fledging_success

Data to estimate fledging success (FS, see equation S2 in Supporting Information). Variables: BROOD - brood ID, MAHATCH - hatching date (number of days since 1 March), FLED - whether the brood fledged any chicks (1) or not (0). FS was estimated at the middle of the four periods: 49, 72, 95, 117.5 days since 1 March

chick_sex

Data to estimate brood sex ratio at fledging (BSR, see equation S1 in Supporting Information). Variables: BROOD - brood ID, MALE - number of male chicks in the brood, FEMALE - number of female chicks in the brood, MAHATCH - hatching date (number of days since 1 March), AGE - brood age at capture. BSR was estimated at the middle of the four periods: 49, 72, 95, 117.5 days since 1 March

brood_size

Data to estimate number of broods hatched (B) and average brood size (BS) for the four periods. Variables: BROOD - brood ID, MAHATCH - hatching date (number of days since 1 March), BROODSIZE - number of chicks hatched, PERIOD - categorical variable giving the four periods

HFC_KP

Heterozygosity, survival, tarsus and mass growth of Kentish plover chicks hatched at Tuzla, Southern Turke

Location and assignment to genetic clusters of ten subpopulations of <i>Phelsuma guimbeaui</i>.

<p><b>a</b> Subpopulations used for the microsatellite analyses. Colours in the pie charts indicate the proportion of genetic clusters identified using STRUCTURE 2.3.2. The three subpopulations only used for mtDNA analyses (L11, L12 and L13) are also shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0093387#pone-0093387-g002" target="_blank">Figure 2a</a>; subpopulations marked with an asterisk are in the Black River mountains. <b>b</b> Bar plots showing the genetic identity of individual samples generated using STRUCTURE 2.3.2. <b>c</b> Bar plot output from TESS with each subpopulation's labelling assignment (%) from GENECLASS2 shown below. The box gives details of each subpopulation (Subpop): vegetation (Veg) was classified as exotic campeche forest (C), exotic eucalyptus forest (E), exotic mango orchard (M), native forest (N) and exotic terminalia forest (T); size is the area (km²) occupied by each subpopulation.</p

Population statistics of the concatenated mtDNA sequences for 13 subpopulations of <i>Phelsuma guimbeaui</i>.

<p>* denotes significant at P<0.05.</p><p>Subpop = subpopulation; Area = area of subpopulation in km²; A = number of individuals per subpopulation; H_N = number of haplotypes; H = haplotype diversity; π = nucleotide diversity; D = Tajima's D; Fs = Fu's Fs statistic; r = raggedness index.</p

Simulation showing the probability of survival and retaining rare alleles, with 95% confidence intervals in parentheses, over 50 years in ten subpopulations of <i>Phelsuma guimbeaui</i> in the absence of migration.

<p>The estimated population size (N_e ×10) with a default rare allele frequency of 0.05 was implemented into the starting parameters of all models.</p

Mean effective population sizes with 95% confidence intervals in parentheses for ten subpopulations of <i>Phelsuma guimbeaui</i> estimated using N_e ESTIMATOR and MIGRATE.

<p>Mean effective population sizes with 95% confidence intervals in parentheses for ten subpopulations of <i>Phelsuma guimbeaui</i> estimated using N_e ESTIMATOR and MIGRATE.</p

Pattern of deforestation in Mauritius from 1773 to 1997.

<p>The red dots indicate the 10 subpopulations for which both microsatellite and mtDNA analyses were conducted, and the yellow dots the three subpopulations for which only mtDNA analyses were carried out. The blue stars mark subpopulations not sampled and the black region within the purple dotted line on the 1997 map shows the Black River mountains. All subpopulation locations were transposed by 1</p

Phylogenetic relationships of mtDNA haplotypes in <i>Phelsuma guimbeaui</i>.

<p>The Bayesian tree was produced in MRBAYES with subpopulation identity (L1 to L13) shown at the end of each branch. In the parsimony network, the circles represent different haplotypes, with their size proportional to the number of geckos. Open circles represent predicted but missing or unsampled haplotypes.</p