Inspired by Nature: Antioxidants and Nanotechnology

Since the advent of modern nanotechnology a couple of decades ago, the field of “nano-bio-med” has attracted particular interest, culminating in an almost meteoric rise of common, feasible, more speculative, and, on occasion, outrightly exotic applications of nanomaterials. [...

Special Issue: Redox Active Natural Products and Their Interaction with Cellular Signalling Pathways

During the last decade, research into natural products has experienced a certain renaissance. The urgent need for more and more effective antibiotics in medicine, the demand for ecologically friendly plant protectants in agriculture, “natural” cosmetics and the issue of a sustainable and healthy nutrition in an ageing society have fuelled research into Nature’s treasure chest of “green gold”. Here, redox active secondary metabolites from plants, fungi, bacteria and other (micro-)organisms often have been at the forefront of the most interesting developments. These agents provide powerful means to interfere with many, probably most cellular signaling pathways in humans, animals and lower organisms, and therefore can be used to protect, i.e., in form of antioxidants, and to frighten off or even kill, i.e., in form of repellants, antibiotics, fungicides and selective, often catalytic “sensor/effector” anticancer agents. Interestingly, whilst natural product research dates back many decades, in some cases even centuries, and compounds such as allicin and various flavonoids have been investigated thoroughly in the past, it has only recently become possible to investigate their precise interactions and mode(s) of action inside living cells. Here, fluorescent staining and labelling on the one side, and appropriate detection, either qualitatively under the microscope or quantitatively in flow cytometers and plate readers, on the other, enable researchers to obtain the various pieces of information necessary to construct a fairly complete puzzle of how such compounds act and interact in living cells. Complemented by the more traditional activity assays and Western Blots, and increasingly joined by techniques such as proteomics, chemogenetic screening and mRNA profiling, these cell based bioanalytical techniques form a powerful platform for “intracellular diagnostics”. In the case of redox active compounds, especially of Reactive Sulfur Species (RSS), such techniques have recently unraveled concepts such as the “cellular thiolstat”, yet considerably more research is required in order to gain a full understanding of why and how such compounds act—often selectively—in different organism

Sci: An Inclusive, Multidisciplinary Scientific Journal

Sci (ISSN 2413-4155) is an international, open-access journal that covers most fields of scientific research. It has set out to challenge the conventional single- and double-blind peer review processes by adopting a post-publication public peer review (P4R) model. The model faced some difficulties with indexing and archiving services, prolongated the peer review process and its transparency received some opposition. It was therefore necessary to revisit the P4R model and modify it, resulting in the hybrid model (P4R hybrid) which is implemented in Sci today. Sci remains open to the whole scientific community as an inclusive and multidisciplinary scientific journal. In this context, we present you with six valuable contributions to the first Special Issue of Feature Papers Editors Collection 2020. The topics of the contributions address relevant and compelling issues ranging from data protection, material science, COVID-19 to the environment and climate change

Make a Stand(ard) for Science

During the global Corona pandemic, the validity of science has been challenged by sections of the public, often for political gains. Here, science and scientists have become associated with relativity and unreliability, and in extreme cases, with false data and acting as accomplices in wider conspiracies. Is science really relative and therefore subject to opinion? Is there alternative science similar to alternative political parties, from which one may pick and choose or upon which one might vote by majority? Can anyone claim to do science? Or is the science of the day a form of art for the few, an exclusive club of trained experts, producing accurate and precise data which leaves no room for possible heretics? These questions address the basics of our understanding of modern science and the answers are likely to shape the science itself as well as its public perception in the 21st century. Interestingly, the answers are not found in the laboratory, as these are philosophical questions best reflected upon from an epistemological perspective, i.e., questions directly linked to scientific knowledge and method. Briefly dwelling on the latter is the general theme of this editorial. We would also like to take this chance to spread the word that Sci is now indexed in Scopus and ready to launch the “what’s it about?” initiative, in which authors provide a concise summary of their contributions rendered towards non-specialists and the more general public. As a proof of concept, we present to you the summaries of the valuable contributions to the Special Issue “Feature Papers 2021 Editors Collection” directly from the authors

1,4-Naphthoquinones: From Oxidative Damage to Cellular and Inter-Cellular Signaling

Naphthoquinones may cause oxidative stress in exposed cells and, therefore, affect redox signaling. Here, contributions of redox cycling and alkylating properties of quinones (both natural and synthetic, such as plumbagin, juglone, lawsone, menadione, methoxy-naphthoquinones, and others) to cellular and inter-cellular signaling processes are discussed: (i) naphthoquinone-induced Nrf2-dependent modulation of gene expression and its potentially beneficial outcome; (ii) the modulation of receptor tyrosine kinases, such as the epidermal growth factor receptor by naphthoquinones, resulting in altered gap junctional intercellular communication. Generation of reactive oxygen species and modulation of redox signaling are properties of naphthoquinones that render them interesting leads for the development of novel compounds of potential use in various therapeutic settings

The Enigmatic Metallothioneins: A Case of Upward-Looking Research

In the mid-1950s, Bert Lester Vallee and his colleague Marvin Margoshes discovered a molecule referred to today as metallothionein (MT). Meanwhile, MTs have been shown to be common in many biological organisms. Despite their prevalence, however, it remains unclear to date what exactly MTs do and how they contribute to the biological function of an organism or organ. We investigate why biochemical research has not yet been able to pinpoint the function(s) of MTs. We shall systematically examine both the discovery of and recent research on Dr. Vallee’s beloved family of MT proteins utilizing tools from philosophy of science. Our analysis highlights that Vallee’s initial work exhibited features prototypical of a developing research tradition: it was upward-looking, exploratory, and utilized mere interactions. Since the 1960s, MT research has increasingly become intervention- and hypothesis-based while it remained largely upward-looking in character. Whilst there is no reason to think that upward-looking research cannot successfully yield structure-function mappings, it has not yet been successful in the case of MTs. Thus, we suggest it might be time to change track and consider other research strategies looking into the evolution of MTs. Recent studies in mollusks render research in this direction worthy of pursuit

Changing Sci from Post-Publication Peer-Review to Single-Blind Peer-Review

Sci was launched in 2018 [...

Disambiguating “Mechanisms” in Pharmacy: Lessons from Mechanist Philosophy of Science

Talk of mechanisms is ubiquitous in the natural sciences. Interdisciplinary fields such as biochemistry and pharmacy frequently discuss mechanisms with the assistance of diagrams. Such diagrams usually depict entities as structures or boxes and activities or interactions as arrows. While some of these arrows may indicate causal or componential relations, others may represent temporal or operational orders. Importantly, what kind of relation an arrow represents may not only vary with context but also be underdetermined by empirical data. In this manuscript, we investigate how an analysis of pharmacological mechanisms in terms of producing and underlying mechanisms—as discussed in the contemporary philosophy of science—may shed light on these issues. Specifically, we shall argue that while pharmacokinetic mechanisms usually describe causal chains of production, pharmacodynamics tends to focus on mechanisms of action underlying the in vivo effects of a drug. Considering the action of thyroid gland hormones in the human body as a case study, we further demonstrate that pharmacodynamic schemes tend to incorporate entities and interactions on multiple levels. Yet, traditional pharmacodynamic schemes are sketched “flat”, i.e., non-hierarchically. We suggest that transforming flat pharmacodynamic schemes into mechanistic multi-level representations may assist in disentangling the different kinds of mechanisms and relations depicted by arrows in flat schemes. The resulting Baumkuchen model provides a powerful and practical alternative to traditional flat schemes, as it explicates the relevant mechanisms and relations more clearly. On a more general note, our discussion demonstrates how pharmacology and related disciplines may benefit from applying concepts from the new mechanist philosophy to guide the interpretation of scientific diagrams