Dynamics and structure of an aging binary colloidal glass

We study aging in a colloidal suspension consisting of micron-sized particles in a liquid. This system is made glassy by increasing the particle concentration. We observe samples composed of particles of two sizes, with a size ratio of 1:2.1 and a volume fraction ratio 1:6, using fast laser scanning confocal microscopy. This technique yields real-time, three-dimensional movies deep inside the colloidal glass. Specifically, we look at how the size, motion and structural organization of the particles relate to the overall aging of the glass. Particles move in spatially heterogeneous cooperative groups. These mobile regions tend to be richer in small particles, and these small particles facilitate the motion of nearby particles of both sizes.Comment: 7 pages; submitted to Phys. Rev. E. Revised with 1 new figure, improved tex

Analytical study of non Gaussian fluctuations in a stochastic scheme of autocatalytic reactions

A stochastic model of autocatalytic chemical reactions is studied both numerically and analytically. The van Kampen perturbative scheme is implemented, beyond the second order approximation, so to capture the non Gaussianity traits as displayed by the simulations. The method is targeted to the characterization of the third moments of the distribution of fluctuations, originating from a system of four populations in mutual interaction. The theory predictions agree well with the simulations, pointing to the validity of the van Kampen expansion beyond the conventional Gaussian solution.Comment: 15 pages, 8 figures, submitted to Phys. Rev.

Universal topological phase of 2D stabilizer codes

Two topological phases are equivalent if they are connected by a local unitary transformation. In this sense, classifying topological phases amounts to classifying long-range entanglement patterns. We show that all 2D topological stabilizer codes are equivalent to several copies of one universal phase: Kitaev's topological code. Error correction benefits from the corresponding local mappings.Comment: 4 pages, 3 figure

Haplotype association analysis of meat quality traits at the bovine PRKAG3 locus

The current study presents the results of a preliminary haplotype association analysis at the bovine PRKAG3 locus with meat quality traits in the Chianina breed. No significant association was shown between haploid haplotypes (or diplotypes) and phenotypical traits after applying a Bonferroni correction for multiple comparison. Nonetheless, data from Longissimus dorsi muscle suggest the presence of a statistically non-significant trend toward an influence of the PRKAG3 haploid haplotypes on meat colour (a*) and water holding capacity (M/T) traits, as confirmed also by diplotype-based association analysis. A less clear set of results was observed for the Triceps brachii and Semitendinosus muscles

Equivalence of three-dimensional spacetimes

A solution to the equivalence problem in three-dimensional gravity is given and a practically useful method to obtain a coordinate invariant description of local geometry is presented. The method is a nontrivial adaptation of Karlhede invariant classification of spacetimes of general relativity. The local geometry is completely determined by the curvature tensor and a finite number of its covariant derivatives in a frame where the components of the metric are constants. The results are presented in the framework of real two-component spinors in three-dimensional spacetimes, where the algebraic classifications of the Ricci and Cotton-York spinors are given and their isotropy groups and canonical forms are determined. As an application we discuss Goedel-type spacetimes in three-dimensional General Relativity. The conditions for local space and time homogeneity are derived and the equivalence of three-dimensional Goedel-type spacetimes is studied and the results are compared with previous works on four-dimensional Goedel-type spacetimes.Comment: 13 pages - content changes and corrected typo

f(R) Gravity with Torsion: The Metric-Affine Approach

The role of torsion in f(R) gravity is considered in the framework of metric-affine formalism. We discuss the field equations in empty space and in presence of perfect fluid matter taking into account the analogy with the Palatini formalism. As a result, the extra curvature and torsion degrees of freedom can be dealt as an effective scalar field of fully geometric origin. From a cosmological point of view, such a geometric description could account for the whole Dark Side of the Universe.Comment: 12 page

Visualization of HIV-1 interactions with penile and foreskin epithelia: clues for female-to-male HIV transmission

To gain insight into female-to-male HIV sexual transmission and how male circumcision protects against this mode of transmission, we visualized HIV-1 interactions with foreskin and penile tissues in ex vivo tissue culture and in vivo rhesus macaque models utilizing epifluorescent microscopy. 12 foreskin and 14 cadaveric penile specimens were cultured with R5-tropic photoactivatable (PA)-GFP HIV-1 for 4 or 24 hours. Tissue cryosections were immunofluorescently imaged for epithelial and immune cell markers. Images were analyzed for total virions, proportion of penetrators, depth of virion penetration, as well as immune cell counts and depths in the tissue. We visualized individual PA virions breaching penile epithelial surfaces in the explant and macaque model. Using kernel density estimated probabilities of localizing a virion or immune cell at certain tissue depths revealed that interactions between virions and cells were more likely to occur in the inner foreskin or glans penis (from local or cadaveric donors, respectively). Using statistical models to account for repeated measures and zero-inflated datasets, we found no difference in total virions visualized at 4 hours between inner and outer foreskins from local donors. At 24 hours, there were more virions in inner as compared to outer foreskin (0.0495 +/- 0.0154 and 0.0171 +/- 0.0038 virions/image, p = 0.001). In the cadaveric specimens, we observed more virions in inner foreskin (0.0507 +/- 0.0079 virions/image) than glans tissue (0.0167 +/- 0.0033 virions/image, p<0.001), but a greater proportion was seen penetrating uncircumcised glans tissue (0.0458 +/- 0.0188 vs. 0.0151 +/- 0.0100 virions/image, p = 0.099) and to significantly greater mean depths (29.162 +/- 3.908 vs. 12.466 +/- 2.985 μm). Our in vivo macaque model confirmed that virions can breach penile squamous epithelia in a living model. In summary, these results suggest that the inner foreskin and glans epithelia may be important sites for HIV transmission in uncircumcised men

Growing dynamical length, scaling and heterogeneities in the 3d Edwards-Anderson model

We study numerically spatio-temporal fluctuations during the out-of-equilibrium relaxation of the three-dimensional Edwards-Anderson model. We focus on two issues. (1) The evolution of a growing dynamical length scale in the glassy phase of the model, and the consequent collapse of the distribution of local coarse-grained correlations measured at different pairs of times on a single function using {\it two} scaling parameters, the value of the global correlation at the measuring times and the ratio of the coarse graining length to the dynamical length scale (in the thermodynamic limit). (2) The `triangular' relation between coarse-grained local correlations at three pairs of times taken from the ordered instants $t_3 \leq t_2 \leq t_1$. Property (1) is consistent with the conjecture that the development of time-reparametrization invariance asymptotically is responsible for the main dynamic fluctuations in aging glassy systems as well as with other mechanisms proposed in the literature. Property (2), we stress, is a much stronger test of the relevance of the time-reparametrization invariance scenario.Comment: 24 pages, 12 fig

Testing metric-affine f(R)-gravity by relic scalar gravitational waves

We discuss the emergence of scalar gravitational waves in metric-affine f(R)-gravity. Such a component allows to discriminate between metric and metric-affine theories The intrinsic meaning of this result is that the geodesic structure of the theory can be discriminated. We extend the formalism of cross correlation analysis, including the additional polarization mode, and calculate the detectable energy density of the spectrum for cosmological relic gravitons. The possible detection of the signal is discussed against sensitivities of VIRGO, LIGO and LISA interferometers.Comment: 12 pages, 4 figure

Fluctuations in glassy systems

We summarize a theoretical framework based on global time-reparametrization invariance that explains the origin of dynamic fluctuations in glassy systems. We introduce the main ideas without getting into much technical details. We describe a number of consequences arising from this scenario that can be tested numerically and experimentally distinguishing those that can also be explained by other mechanisms from the ones that we believe, are special to our proposal. We support our claims by presenting some numerical checks performed on the 3d Edwards-Anderson spin-glass. Finally, we discuss up to which extent these ideas apply to super-cooled liquids that have been studied in much more detail up to present.Comment: 33 pages, 7 figs, contribution to JSTAT special issue `Principles of Dynamical Systems' work-shop at Newton Institute, Univ. of Cambridge, U