Lattice stretching bistability and dynamic heterogeneity

A simple one-dimensional lattice model is suggested to describe the experimentally observed plateau in force-stretching diagrams for some macromolecules. This chain model involves the nearest-neighbor interaction of a Morse-like potential (required to have a saturation branch) and an harmonic second-neighbor coupling. Under an external stretching applied t o the chain ends, the intersite Morse-like potential results in the appearance of a double-well potential within each chain monomer, whereas the interaction between the second neighbors provide s a homogeneous bistable (degenerate) ground state, at least within a certain part of the chain. As a result, different conformational changes occur in the chain under the external forcing. The transition regions between these conformations are described as topological solitons. With a strong second-neighbor interaction, the solitons describe the transition between the bistable ground states. However, the key point of the model is the appearance of a heterogenous structure, when the second-neighbor coupling is sufficiently weak. In this case, a part of the chain has short bonds with a single-well potential, whereas the complementary part admits strongly stretched bonds with a double-well potential. This case allows us to explain the existence of a plateau in the force-stretching diagram for DNA and alpha-helix protein. Finally, the soliton dynamics are studied in detail.Comment: Submitted to Phys. Rev. E, 13 figure

Quasiperiodic Solutions of the Fibre Optics Coupled Nonlinear Schr{\"o}dinger Equations

We consider travelling periodical and quasiperiodical waves in single mode fibres, with weak birefringence and under the action of cross-phase modulation. The problem is reduced to the ``1:2:1" integrable case of the two-particle quartic potential. A general approach for finding elliptic solutions is given. New solutions which are associated with two-gap Treibich-Verdier potentials are found. General quasiperiodic solutions are given in terms of two dimensional theta functions with explicit expressions for frequencies in terms of theta constants. The reduction of quasiperiodic solutions to elliptic functions is discussed.Comment: 24 page

Strangelet dwarfs

If the surface tension of quark matter is low enough, quark matter is not self bound. At sufficiently low pressure and temperature, it will take the form of a crystal of positively charged strangelets in a neutralizing background of electrons. In this case there will exist, in addition to the usual family of strange stars, a family of low-mass large-radius objects analogous to white dwarfs, which we call "strangelet dwarfs". Using a generic parametrization of the equation of state of quark matter, we calculate the mass-radius relationship of these objects.Comment: 10 pages, LaTeX, added discussion of CFL phase and strangelet pollution, version to appear in journal. arXiv admin note: text overlap with arXiv:0808.067

Nonlinearity-induced conformational instability and dynamics of biopolymers

We propose a simple phenomenological model for describing the conformational dynamics of biopolymers via the nonlinearity-induced buckling and collapse (i.e. coiling up) instabilities. Taking into account the coupling between the internal and mechanical degrees of freedom of a semiflexible biopolymer chain, we show that self-trapped internal excitations (such as amide-I vibrations in proteins, base-pair vibrations in DNA, or polarons in proteins) may produce the buckling and collapse instabilities of an initially straight chain. These instabilities remain latent in a straight infinitely long chain, because the bending of such a chain would require an infinite energy. However, they manifest themselves as soon as we consider more realistic cases and take into account a finite length of the chain. In this case the nonlinear localized modes may act as drivers giving impetus to the conformational dynamics of biopolymers. The buckling instability is responsible, in particular, for the large-amplitude localized bending waves which accompany the nonlinear modes propagating along the chain. In the case of the collapse instability, the chain folds into a compact three-dimensional coil. The viscous damping of the aqueous environment only slows down the folding of the chain, but does not stop it even for a large damping. We find that these effects are only weakly affected by the peculiarities of the interaction potentials, and thus they should be generic for different models of semiflexible chains carrying nonlinear localized excitations.Comment: 4 pages (RevTeX) with 5 figures (EPS

Non-integrability of the mixmaster universe

We comment on an analysis by Contopoulos et al. which demonstrates that the governing six-dimensional Einstein equations for the mixmaster space-time metric pass the ARS or reduced Painlev\'{e} test. We note that this is the case irrespective of the value, $I$, of the generating Hamiltonian which is a constant of motion. For $I < 0$ we find numerous closed orbits with two unstable eigenvalues strongly indicating that there cannot exist two additional first integrals apart from the Hamiltonian and thus that the system, at least for this case, is very likely not integrable. In addition, we present numerical evidence that the average Lyapunov exponent nevertheless vanishes. The model is thus a very interesting example of a Hamiltonian dynamical system, which is likely non-integrable yet passes the reduced Painlev\'{e} test.Comment: 11 pages LaTeX in J.Phys.A style (ioplppt.sty) + 6 PostScript figures compressed and uuencoded with uufiles. Revised version to appear in J Phys.

Frobenius-Perron Resonances for Maps with a Mixed Phase Space

Resonances of the time evolution (Frobenius-Perron) operator P for phase space densities have recently been shown to play a key role for the interrelations of classical, semiclassical and quantum dynamics. Efficient methods to determine resonances are thus in demand, in particular for Hamiltonian systems displaying a mix of chaotic and regular behavior. We present a powerful method based on truncating P to a finite matrix which not only allows to identify resonances but also the associated phase space structures. It is demonstrated to work well for a prototypical dynamical system.Comment: 5 pages, 2 figures, 2nd version as published (minor changes

Gluon distributions in nucleons and pions at a low resolution scale

In this paper we study the gluon distribution functions in nucleons and pions at a low resolution $Q^2$ scale. This is an important issue since parton densities at low $Q^2$ have always been taken as an external input which is adjusted through DGLAP evolution to fit the experimental data at higher scales. Here, in the framework of a model recently developed, it is shown that the hypothetical cloud of {\it neutral} pions surrounding nucleons and pions appears to be responsible for the characteristic valence-like gluon distributions needed at the inital low scale. As an additional result, we get the remarkable prediction that neutral and charged pions have different intrinsic sea flavor contents.Comment: final version to appear in Phys. Rev. D. Discussion on several points enlarge