Inferring the function of genes from synthetic lethal mutations

Techniques for detecting synthetic lethal mutations in double gene deletion experiments are emerging as powerful tool for analysing genes in parallel or overlapping pathways with a shared function. This paper introduces a logic-based approach that uses synthetic lethal mutations for mapping genes of unknown function to enzymes in a known metabolic network. We show how such mappings can be automatically computed by a logical learning system called eXtended Hybrid Abductive Inductive Learning (XHAIL)

DBD Plasma Assisted CO2 Decomposition: Influence of Diluent Gases

arbon dioxide (CO2) partial reduction to carbon monoxide (CO) and oxygen has been conducted in a dielectric barrier discharge reactor (DBD) operating a packed bed configuration and the results are compared with that of no packing condition. The effect of diluent gas is studied to understand the influence on dielectric strength of the plasma gas on CO2 splitting, with the objective of obtaining the best CO selectivity and high energy efficiency. Typical results indicated that among N-2, He and Ar gases, Ar showed the best decomposition efficiency. Glass beads packing has a strong influence on the performance, probably due to the enhanced field strength due to dielectric nature of the packed material. In a similar manner, Ar mole ratio in the gas mixture also played a significant role, where the maximum CO2 conversion of 19.5% was obtained with packed DBD at CO2: Ar ratio 1: 2. The best CO yield (16.8%) was also obtained under the same conditions. The highest energy efficiency was found to be 0.945 mmol/kJ. The activated species formed inside the CO2 plasma were identified by optical emission spectroscopy

Staging superstructures in high-TcT_c Sr/O co-doped La2−x_{2-x}Srx_xCuO4+y_{4+y}

We present high energy X-ray diffraction studies on the structural phases of an optimal high-$T_c$ superconductor La$_{2-x}$Sr$_x$CuO$_{4+y}$ tailored by co-hole-doping. This is specifically done by varying the content of two very different chemical species, Sr and O, respectively, in order to study the influence of each. A superstructure known as staging is observed in all samples, with the staging number $n$ increasing for higher Sr dopings $x$. We find that the staging phases emerge abruptly with temperature, and can be described as a second order phase transition with transition temperatures slightly depending on the Sr doping. The Sr appears to correlate the interstitial oxygen in a way that stabilises the reproducibility of the staging phase both in terms of staging period and volume fraction in a specific sample. The structural details as investigated in this letter appear to have no direct bearing on the electronic phase separation previously observed in the same samples. This provides new evidence that the electronic phase separation is determined by the overall hole concentration rather than specific Sr/O content and concommittant structural details.Comment: 8 pages, incl. 4 figure

Development and Validation of Enantiomeric Purity of Montelukast by SFC Method on Amylose Based Stationary Phase

A new Supercritical fluid liquid chromatographic (SFC) method has been developed in normal-phase conditions for the determination of enantiomeric purity of Montelukast sodium (S,E)-2-(1-((1-3-(2-(7-chloroquinolin-2-yl)vinyl)phenyl)-3-(2-(2-hydroxypropan-2-yl)phenyl)propylthio)ethyl) cyclopropyl) acetic acid (R-isomer) (Anti asthmatic drug) in bulk drugs and in dosage forms. The sample was screened on the analytical SFC to determine the best column for the separation. The screening conditions are Column: Chiralpak AS-H (250 mm x 4.6 mm, 5 μm) column using a mobile phase system containing Supercritical fluid (Co2) and 2-Propanol in the ratio (85:15% v/v). The mobile-phase compositions and the differences in separation capability of the method is noted. The resolution between two enantiomers is found to be greater than 1.5. The SFC method for the separation of enantiomers of Montelukast is proved Accurate, Precise, Linear and robust. Relative standard deviation of retention times and peak areas were better than 0.2% and 0.4%, respectively, for precision.Â

Mid-infrared imaging of the young binary star Hen 3-600: Evidence for a dust disk around the primary

We present high-resolution mid-infrared observations of the nearby late-type young binary system Hen 3-600. The binary, at a distance of $\sim$ 50 pc, could be a member of the TW Hydrae Association, the nearest known group of young stars, with an age of a few million years. Our images make it possible for the first time to determine which star in the pair, separated by 1.4'', harbors the mid-infrared excess detected by IRAS. In the near-infrared, where the radiation is primarily photospheric, Hen 3-600A (M3) and Hen 3-600B (M3.5) have a flux ratio of 1.6. At 4.8$\mu$m, 10.8$\mu$m, and 18.2$\mu$m, the primary becomes increasingly dominant over the secondary, suggesting that most of the circumstellar dust in the system resides around Hen 3-600A. Comparison of the spectral energy distribution (SED) of Hen 3-600A to the median SED of classical T Tauri stars suggests that its disk may be truncated by the secondary and provides tentative evidence for a central disk hole. The distribution of dust in the Hen 3-600 system may provide important clues to the formation and evolution of protoplanetary disks in close binaries.Comment: 9 pages, 2 PostScript figures, accepted for publication in The Astrophysical Journal Letter

Rhythmic glucose metabolism regulates the redox circadian clockwork in human red blood cells

Circadian clocks coordinate mammalian behavior and physiology enabling organisms to anticipate 24-hour cycles. Transcription-translation feedback loops are thought to drive these clocks in most of mammalian cells. However, red blood cells (RBCs), which do not contain a nucleus, and cannot perform transcription or translation, nonetheless exhibit circadian redox rhythms. Here we show human RBCs display circadian regulation of glucose metabolism, which is required to sustain daily redox oscillations. We found daily rhythms of metabolite levels and flux through glycolysis and the pentose phosphate pathway (PPP). We show that inhibition of critical enzymes in either pathway abolished 24-hour rhythms in metabolic flux and redox oscillations, and determined that metabolic oscillations are necessary for redox rhythmicity. Furthermore, metabolic flux rhythms also occur in nucleated cells, and persist when the core transcriptional circadian clockwork is absent in Bmal1 knockouts. Thus, we propose that rhythmic glucose metabolism is an integral process in circadian rhythms. © 2021, The Author(s)

Phylogenetic Analysis and Rapid Identification of the Whitefly, Bemisia afer, in China

The phylogenetic relationship between the whitefly Bemisia afer (Priesner & Hosny) (Hemiptera: Aleyrodidae) from China and other populations among the world were analyzed based on the mitochondrial cytochrome oxidase I (mtCOI) gene. Phylogenetic analysis of mtCOI sequences and those of reference B. afer sequences showed that the populations of the species could be separated into 5 clades (I–V). There were at least two clades of the species from China (IV and V). These data suggested that B. afer might be a species complex. The Chinese B. afer populations were most divergent with B. afer from the United Kingdom and African countries. The distance between the Chinese B. afer (IV and V) and clades I, II, and III is more than 32%, while the distance among clades I, II, III is lower than 7.7%. A new set of primers specific to B. afer was designed to amplify a region of approximately 400 bp to discriminate B. afer from other Bemisia species in China based on mtCOI sequences

Metabolic oscillations on the circadian time scale in <i>Drosophila</i> cells lacking clock genes.

Circadian rhythms are cell-autonomous biological oscillations with a period of about 24 h. Current models propose that transcriptional feedback loops are the primary mechanism for the generation of circadian oscillations. Within this framework, &lt;i&gt;Drosophila&lt;/i&gt; S2 cells are regarded as "non-rhythmic" cells, as they do not express several canonical circadian components. Using an unbiased multi-omics approach, we made the surprising discovery that &lt;i&gt;Drosophila&lt;/i&gt; S2 cells do in fact display widespread daily rhythms. Transcriptomics and proteomics analyses revealed that hundreds of genes and their products, and in particular metabolic enzymes, are rhythmically expressed in a 24-h cycle. Metabolomics analyses extended these findings and demonstrate that central carbon metabolism and amino acid metabolism are core metabolic pathways driven by protein rhythms. We thus demonstrate that 24-h metabolic oscillations, coupled to gene and protein cycles, take place in nucleated cells without the contribution of any known circadian regulators. These results therefore suggest a reconsideration of existing models of the clockwork in &lt;i&gt;Drosophila&lt;/i&gt; and other eukaryotic systems

Cortical thickness, surface area and volume measures in Parkinson's disease, multiple system atrophy and progressive supranuclear palsy

OBJECTIVE Parkinson's disease (PD), Multiple System Atrophy (MSA) and Progressive Supranuclear Palsy (PSP) are neurodegenerative diseases that can be difficult to distinguish clinically. The objective of the current study was to use surface-based analysis techniques to assess cortical thickness, surface area and grey matter volume to identify unique morphological patterns of cortical atrophy in PD, MSA and PSP and to relate these patterns of change to disease duration and clinical features. METHODS High resolution 3D T1-weighted MRI volumes were acquired from 14 PD patients, 18 MSA, 14 PSP and 19 healthy control participants. Cortical thickness, surface area and volume analyses were carried out using the automated surface-based analysis package FreeSurfer (version 5.1.0). Measures of disease severity and duration were assessed for correlation with cortical morphometric changes in each clinical group. RESULTS Results show that in PSP, widespread cortical thinning and volume loss occurs within the frontal lobe, particularly the superior frontal gyrus. In addition, PSP patients also displayed increased surface area in the pericalcarine. In comparison, PD and MSA did not display significant changes in cortical morphology. CONCLUSION These results demonstrate that patients with clinically established PSP exhibit distinct patterns of cortical atrophy, particularly affecting the frontal lobe. These results could be used in the future to develop a useful clinical application of MRI to distinguish PSP patients from PD and MSA patients