3,278 research outputs found

    Telomere length measurement by a novel monochrome multiplex quantitative PCR method

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    The current quantitative polymerase chain reaction (QPCR) assay of telomere length measures telomere (T) signals in experimental DNA samples in one set of reaction wells, and single copy gene (S) signals in separate wells, in comparison to a reference DNA, to yield relative T/S ratios that are proportional to average telomere length. Multiplexing this assay is desirable, because variation in the amount of DNA pipetted would no longer contribute to variation in T/S, since T and S would be collected within each reaction, from the same input DNA. Multiplexing also increases throughput and lowers costs, since half as many reactions are needed. Here, we present the first multiplexed QPCR method for telomere length measurement. Remarkably, a single fluorescent DNA-intercalating dye is sufficient in this system, because T signals can be collected in early cycles, before S signals rise above baseline, and S signals can be collected at a temperature that fully melts the telomere product, sending its signal to baseline. The correlation of T/S ratios with Terminal Restriction Fragment (TRF) lengths measured by Southern blot was stronger with this monochrome multiplex QPCR method (R2 = 0.844) than with our original singleplex method (R2 = 0.677). Multiplex T/S results from independent runs on different days were highly reproducible (R2 = 0.91)

    County pneumonia cases surged during Army tests

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    Donor supplied date: between 1950 and 1959[Fort McClellan]Originally scanned to TIFF at 400 dpi on 2014-01-18. Original scan in preservation repository

    2 bacteria reported used in 1952 testing

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    Donor supplied date.Digital reproduction of: print, 7.5 x 1 in[Fort McClellan]Originally scanned to TIFF at 400 dpi on 2014-01-18. Original scan in preservation repository

    Investigation of Atg11 and its interaction with Ypt1 in autophagy

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    Autophagy is a cellular process conserved in eukaryotes that involves the trafficking of intracellular material from the cytosol to the vacuole/lysosome. This material is wrapped in a double membraned vesicle called an autophagosome, which ls constructed at the pre-autophagosomal structure. Many proteins are Involved In autophagy, one of them being Atgll. This protein is crucial in the selective autophagy pathway, and is responsible for proper formation of the pre-autophagosomal structure as well as recruiting the material intended for degradation to the autophagosome. Atgl 1 interacts with many other autophagy proteins, but it Is unknown whether it interacts with these binding partners spatially or temporally. To better understand the mechanism of Atg11\u27 s interactions, it was tested against Yptl, an upstream regulator whose Interaction with Atgll is crucial for selective autophagy. Yptl with an N-terminal 6-histidine tag was expressed and purified using Rosetta cells, yielding a concentration of 0. 242 mg/ml seems low. This protein was then used in an in vitro binding test with pure GST Ā·Atgl1CC2Ā·3 and imaged via Western blot using primary antibodies rabbit antihistidine {raHis) and rabbit anti-GST (raGST}, and secondary antibody goat anti-rabbit (Gar). The blot showed no Interaction between the proteins in vitro, so the interaction was tested in vivo using a yeast 2-hybrid screen with a multiple-knockout strain. BO-Yptl was tested against AD-Atg11CC2-3, pseudo-positive control AD-Atgll, and negative control AD-empty. Contrary to previous literature, i no interaction showed between the two proteins in any of the strains. This indicates that another type of selection must be used, or there might be another protein involved in the interaction.
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