Acoustically controlled enhancement of molecular sensing to assess oxidative stress in cells

We demonstrate a microfluidic platform for the controlled aggregation of colloidal silver nanoparticles using surface acoustic waves (SAWs), enabling surface enhanced Raman scattering (SERS) analysis of a cell based model for oxidative damage. We show that by varying the frequency and the power of the acoustic energy, it is possible to modulate the aggregation of the colloid within the sample and hence to optimise the SERS analysis

Carbon sequestration and biogeochemical cycling in a saltmarsh subject to coastal managed realignment

Globally, wetlands provide the largest terrestrial carbon (C) store, and restoration of degraded wetlands provides a potentially important mechanism for climate change mitigation. We examined the potential for restored saltmarshes to sequester carbon, and found that they can provide a modest, but sustained, sink for atmospheric CO2. Rates of C and nutrient cycling were measured and compared between a natural saltmarsh (high- and low-shore locations), claimed arable land on former high-shore saltmarsh and a managed realignment restoration site (high- and low-shore) in transition from agricultural land to saltmarsh 15 years after realignment, at Tollesbury, Essex, UK. We measured pools and turnover of C and nitrogen (N) in soil and vegetation at each site using a range of methods, including gas flux measurement and isotopic labelling. The natural high-shore site had the highest soil organic matter concentrations, topsoil C stock and below-ground biomass, whereas the agricultural site had the highest total extractable N concentration and lowest soil C/N ratio. Ecosystem respiration rates were similar across all three high-shore sites, but much higher in both low-shore sites, which receive regular inputs of organic matter and nutrients from the estuary. Total evolution of 14C-isotopically labelled substrate as CO2 was highest at the agricultural site, suggesting that low observed respiration rates here were due to low substrate supply (following a recent harvest) rather than to inherently low microbial activity. The results suggest that, after 15 years, the managed realignment site is not fully equivalent to the natural saltmarsh in terms of biological and chemical function. While above ground biomass, extractable N and substrate mineralisation rates in the high-shore site were all quite similar to the natural site, less dynamic ecosystem properties including soil C stock, C/N ratio and below-ground biomass all remained more similar to the agricultural site. These results suggest that reversion to natural biogeochemical functioning will occur following restoration, but is likely to be slow; we estimate that it will take approximately 100 years for the restored site to accumulate the amount of C currently stored in the natural site, at a rate of 0.92 t C ha−1 yr−1

Connecting global priorities: biodiversity and human health: a state of knowledge review.

Healthy communities rely on well-functioning ecosystems. They provide clean air, fresh water, medicines and food security. They also limit disease and stabilize the climate. But biodiversity loss is happening at unprecedented rates, impacting human health worldwide.The report, Connecting Global Priorities: Biodiversity and Human Health, focuses on the complex and multi-faceted connections between biodiversity and human health, and how the loss of biodiversity and corresponding ecosystem services may negatively influence health. One of the first integrative reviews of its kind, the report brings together knowledge from several scientific disciplines, including public health, conservation, agriculture, epidemiology and development. The book is a joint publication of the Convention on Biological Diversity and World Health Organization. Danny Hunter, Senior Scientist, Bioversity International is one of the Lead Coordinating Authors of the book and co-lead author on two chapters:Chapter 5: Agricultural biodiversity and food security Chapter 6: Biodiversity and nutritio

A gamma- and X-ray detector for cryogenic, high magnetic field applications

As part of an experiment to measure the spectrum of photons emitted in beta-decay of the free neutron, we developed and operated a detector consisting of 12 bismuth germanate (BGO) crystals coupled to avalanche photodiodes (APDs). The detector was operated near liquid nitrogen temperature in the bore of a superconducting magnet and registered photons with energies from 5 keV to 1000 keV. To enlarge the detection range, we also directly detected soft X-rays with energies between 0.2 keV and 20 keV with three large area APDs. The construction and operation of the detector is presented, as well as information on operation of APDs at cryogenic temperatures

Application of a simple multiplicative spatio-temporal stream water quality model to the river Conwy, North Wales

We use a simple multiplicative spatio-temporal model to describe variability in a sequence of water quality monitoring data from headwater streams in the Conwy catchment, North Wales. The spatial component of the model treats concentrations as due to simple mixing of a small number of distinct source types, each associated with particular upstream catchment characteristics. The temporal component allows concentration variability due to seasonal or hydrological change. We apply the model using three candidate catchment characteristic classifications to generate mixing concentrations, and a seasonal component to describe temporal variability, and test a range of sub-models. We identify a cross-classification of soil and land cover as providing the best spatial indicator of water quality of the classifications considered. The spatial model based on a selected grouped cross-classification was shown to account for between 35% and 90% of the spatial variability and the seasonal model accounted for between 45% and 100% of the temporal variability in the data. Analysis of residuals showed an inverse relationship between DOC and sulphate and between hydrogen ion concentration and calcium and magnesium. We also found residual correlations between sites which are strongly related to landscape class. These are attributed to landscape class by time interactions which are not accounted for in the simple multiplicative model

SL(2,C) Chern-Simons theory and the asymptotic behavior of the colored Jones polynomial

We clarify and refine the relation between the asymptotic behavior of the colored Jones polynomial and Chern-Simons gauge theory with complex gauge group SL(2,C). The precise comparison requires a careful understanding of some delicate issues, such as normalization of the colored Jones polynomial and the choice of polarization in Chern-Simons theory. Addressing these issues allows us to go beyond the volume conjecture and to verify some predictions for the behavior of the subleading terms in the asymptotic expansion of the colored Jones polynomial.Comment: 15 pages, 7 figure

The role of genetic selection and climatic factors in the dispersal of anatomically modern humans out of Africa.

The evolutionarily recent dispersal of anatomically modern humans (AMH) out of Africa (OoA) and across Eurasia provides a unique opportunity to examine the impacts of genetic selection as humans adapted to multiple new environments. Analysis of ancient Eurasian genomic datasets (~1,000 to 45,000 y old) reveals signatures of strong selection, including at least 57 hard sweeps after the initial AMH movement OoA, which have been obscured in modern populations by extensive admixture during the Holocene. The spatiotemporal patterns of these hard sweeps provide a means to reconstruct early AMH population dispersals OoA. We identify a previously unsuspected extended period of genetic adaptation lasting ~30,000 y, potentially in the Arabian Peninsula area, prior to a major Neandertal genetic introgression and subsequent rapid dispersal across Eurasia as far as Australia. Consistent functional targets of selection initiated during this period, which we term the Arabian Standstill, include loci involved in the regulation of fat storage, neural development, skin physiology, and cilia function. Similar adaptive signatures are also evident in introgressed archaic hominin loci and modern Arctic human groups, and we suggest that this signal represents selection for cold adaptation. Surprisingly, many of the candidate selected loci across these groups appear to directly interact and coordinately regulate biological processes, with a number associated with major modern diseases including the ciliopathies, metabolic syndrome, and neurodegenerative disorders. This expands the potential for ancestral human adaptation to directly impact modern diseases, providing a platform for evolutionary medicine.Raymond Tobler, Yassine Souilmi, Christian D. Huber, and Alan Coope

Gamow-Teller Strengths for Neutrino Detectors

This research was sponsored by the National Science Foundation Grant NSF PHY-931478

A kinetic approach to eta' production from a CP-odd phase

The production of (eta,eta')- mesons during the decay of a CP-odd phase is studied within an evolution operator approach. We derive a quantum kinetic equation starting from the Witten-DiVecchia-Veneziano Lagrangian for pseudoscalar mesons containing a U_A(1) symmetry breaking term. The non-linear vacuum mean field for the flavour singlet pseudoscalar meson is treated as a classical, self-interacting background field with fluctuations assumed to be small. The numerical solution provides the time evolution of momentum distribution function of produced eta'- mesons after a quench at the deconfinement phase transition. We show that the time evolution of the momentum distribution of the produced mesons depend strongly on the shape of the effective potential at the end of the quench, exhibiting either parametric or tachyonic resonances. Quantum statistical effects are essential and lead to a pronounced Bose enhancement of the low momentum states.Comment: 10 pages, latex, epsfig, 6 figure

A Step Beyond the Bounce: Bubble Dynamics in Quantum Phase Transitions

We study the dynamical evolution of a phase interface or bubble in the context of a \lambda \phi^4 + g \phi^6 scalar quantum field theory. We use a self-consistent mean-field approximation derived from a 2PI effective action to construct an initial value problem for the expectation value of the quantum field and two-point function. We solve the equations of motion numerically in (1+1)-dimensions and compare the results to the purely classical evolution. We find that the quantum fluctuations dress the classical profile, affecting both the early time expansion of the bubble and the behavior upon collision with a neighboring interface.Comment: 12 pages, multiple figure