Structure factors of harmonic and anharmonic Fibonacci chains by molecular dynamics simulations

The dynamics of quasicrystals is characterized by the existence of phason excitations in addition to the usual phonon modes. In order to investigate their interplay on an elementary level we resort to various one-dimensional model systems. The main observables are the static, the incoherent, and the coherent structure factor, which are extracted from molecular dynamics simulations. For the validation of the algorithms, results for the harmonic periodic chain are presented. We then study the Fibonacci chain with harmonic and anharmonic interaction potentials. In the dynamic Fibonacci chain neighboring atoms interact by double-well potentials allowing for phason flips. The difference between the structure factors of the dynamic and the harmonic Fibonacci chain lies in the temperature dependence of the phonon line width. If a bias is introduced in the well depth, dispersionless optic phonon bands split off.Comment: 12 pages, 15 figure

Continuum elastic sphere vibrations as a model for low-lying optical modes in icosahedral quasicrystals

The nearly dispersionless, so-called "optical" vibrational modes observed by inelastic neutron scattering from icosahedral Al-Pd-Mn and Zn-Mg-Y quasicrystals are found to correspond well to modes of a continuum elastic sphere that has the same diameter as the corresponding icosahedral basic units of the quasicrystal. When the sphere is considered as free, most of the experimentally found modes can be accounted for, in both systems. Taking into account the mechanical connection between the clusters and the remainder of the quasicrystal allows a complete assignment of all optical modes in the case of Al-Pd-Mn. This approach provides support to the relevance of clusters in the vibrational properties of quasicrystals.Comment: 9 pages without figure

Proliferation of anomalous symmetries in colloidal monolayers subjected to quasiperiodic light fields

Quasicrystals provide a fascinating class of materials with intriguing properties. Despite a strong potential for numerous technical applications, the conditions under which quasicrystals form are still poorly understood. Currently, it is not clear why most quasicrystals hold 5- or 10-fold symmetry but no single example with 7 or 9-fold symmetry has ever been observed. Here we report on geometrical constraints which impede the formation of quasicrystals with certain symmetries in a colloidal model system. Experimentally, colloidal quasicrystals are created by subjecting micron-sized particles to two-dimensional quasiperiodic potential landscapes created by n=5 or seven laser beams. Our results clearly demonstrate that quasicrystalline order is much easier established for n = 5 compared to n = 7. With increasing laser intensity we observe that the colloids first adopt quasiperiodic order at local areas which then laterally grow until an extended quasicrystalline layer forms. As nucleation sites where quasiperiodicity originates, we identify highly symmetric motifs in the laser pattern. We find that their density strongly varies with n and surprisingly is smallest exactly for those quasicrystalline symmetries which have never been observed in atomic systems. Since such high symmetry motifs also exist in atomic quasicrystals where they act as preferential adsorption sites, this suggests that it is indeed the deficiency of such motifs which accounts for the absence of materials with e.g. 7-fold symmetry

Icosahedral multi-component model sets

A quasiperiodic packing Q of interpenetrating copies of C, most of them only partially occupied, can be defined in terms of the strip projection method for any icosahedral cluster C. We show that in the case when the coordinates of the vectors of C belong to the quadratic field Q[\sqrt{5}] the dimension of the superspace can be reduced, namely, Q can be re-defined as a multi-component model set by using a 6-dimensional superspace.Comment: 7 pages, LaTeX2e in IOP styl

Structure of smectic defect cores: an X-ray study of 8CB liquid crystal ultra-thin films

We study the structure of very thin liquid crystal films frustrated by antagonistic anchorings in the smectic phase. In a cylindrical geometry, the structure is dominated by the defects for film thicknesses smaller than 150 nm and the detailed topology of the defects cores can be revealed by x-ray diffraction. They appear to be split in half tube-shaped Rotating Grain Boundaries (RGB). We determine the RGB spatial extension and evaluate its energy per unit line. Both are significantly larger than the ones usually proposed in the literatureComment: 4 page

Sound modes broadening for Fibonacci one dimensional quasicrystals

We investigate vibrational excitation broadening in one dimensional Fibonacci model of quasicrystals (QCs). The chain is constructed from particles with two masses following the Fibonacci inflation rule. The eigenmode spectrum depends crucially on the mass ratio. We calculate the eigenstates and eigenfunctions. All calculations performed self-consistently within the regular expansion over the three wave coupling constant. The approach can be extended to three dimensional systems. We find that in the intermediate range of mode coupling constants, three-wave broadening for the both types of systems (1D Fibonacci and 3D QCs) depends universally on frequency. Our general qualitative conclusion is that for a system with a non-simple elementary cell phonon spectrum broadening is always larger than for a system with a primitive cell (provided all other characteristics are the same).Comment: 2o pages, 15 figure

Phason elasticity of a three-dimensional quasicrystal: transfer-matrix method

We introduce a new transfer matrix method for calculating the thermodynamic properties of random-tiling models of quasicrystals in any number of dimensions, and describe how it may be used to calculate the phason elastic properties of these models, which are related to experimental measurables such as phason Debye-Waller factors, and diffuse scattering wings near Bragg peaks. We apply our method to the canonical-cell model of the icosahedral phase, making use of results from a previously-presented calculation in which the possible structures for this model under specific periodic boundary conditions were cataloged using a computational technique. We give results for the configurational entropy density and the two fundamental elastic constants for a range of system sizes. The method is general enough allow a similar calculation to be performed for any other random tiling model.Comment: 38 pages, 3 PostScript figures, self-expanding uuencoded compressed tar file, LaTeX using RevTeX macros and epsfig.st

Surface structure of i-Al(68)Pd(23)Mn(9): An analysis based on the T*(2F) tiling decorated by Bergman polytopes

A Fibonacci-like terrace structure along a 5fold axis of i-Al(68)Pd(23)Mn(9) monograins has been observed by T.M. Schaub et al. with scanning tunnelling microscopy (STM). In the planes of the terraces they see patterns of dark pentagonal holes. These holes are well oriented both within and among terraces. In one of 11 planes Schaub et al. obtain the autocorrelation function of the hole pattern. We interpret these experimental findings in terms of the Katz-Gratias-de Boisseu-Elser model. Following the suggestion of Elser that the Bergman clusters are the dominant motive of this model, we decorate the tiling T*(2F) by the Bergman polytopes only. The tiling T*(2F) allows us to use the powerful tools of the projection techniques. The Bergman polytopes can be easily replaced by the Mackay polytopes as the decoration objects. We derive a picture of ``geared'' layers of Bergman polytopes from the projection techniques as well as from a huge patch. Under the assumption that no surface reconstruction takes place, this picture explains the Fibonacci-sequence of the step heights as well as the related structure in the terraces qualitatively and to certain extent even quantitatively. Furthermore, this layer-picture requires that the polytopes are cut in order to allow for the observed step heights. We conclude that Bergman or Mackay clusters have to be considered as geometric building blocks of the i-AlPdMn structure rather than as energetically stable entities

Clusters, phason elasticity, and entropic stabilisation: a theory perspective

Personal comments are made about the title subjects, including: the relation of Friedel oscillations to Hume-Rothery stabilisation; how calculations may resolve the random-tiling versus ideal pictures of quasicrystals; and the role of entropies apart from tile-configurational.Comment: IOP macros; 8pp, 1 figure. In press, Phil. Mag. A (Proc. Intl. Conf. on Quasicrystals 9, Ames Iowa, May 2005

lidR : an R package for analysis of Airborne Laser Scanning (ALS) data

Airborne laser scanning (ALS) is a remote sensing technology known for its applicability in natural resources management. By quantifying the three-dimensional structure of vegetation and underlying terrain using laser technology, ALS has been used extensively for enhancing geospatial knowledge in the fields of forestry and ecology. Structural descriptions of vegetation provide a means of estimating a range of ecologically pertinent attributes, such as height, volume, and above-ground biomass. The efficient processing of large, often technically complex datasets requires dedicated algorithms and software. The continued promise of ALS as a tool for improving ecological understanding is often dependent on user-created tools, methods, and approaches. Due to the proliferation of ALS among academic, governmental, and private-sector communities, paired with requirements to address a growing demand for open and accessible data, the ALS community is recognising the importance of free and open-source software (FOSS) and the importance of user-defined workflows. Herein, we describe the philosophy behind the development of the lidR package. Implemented in the R environment with a C/C++ backend, lidR is free, open-source and cross-platform software created to enable simple and creative processing workflows for forestry and ecology communities using ALS data. We review current algorithms used by the research community, and in doing so raise awareness of current successes and challenges associated with parameterisation and common implementation approaches. Through a detailed description of the package, we address the key considerations and the design philosophy that enables users to implement user-defined tools. We also discuss algorithm choices that make the package representative of the ‘state-of-the-art' and we highlight some internal limitations through examples of processing time discrepancies. We conclude that the development of applications like lidR are of fundamental importance for developing transparent, flexible and open ALS tools to ensure not only reproducible workflows, but also to offer researchers the creative space required for the progress and development of the discipline