202 research outputs found
Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes
The unambiguous application of fungal names is important to communicate scientific findings. Names are critical for (clinical) diagnostics, legal compliance, and regulatory controls, such as biosafety, food security, quarantine regulations, and industrial applications. Consequently, the stability of the taxonomic system and the traceability of nomenclatural changes is crucial for a broad range of users and taxonomists. The unambiguous application of names is assured by the preservation of nomenclatural history and the physical organisms representing a name. Fungi are extremely diverse in terms of ecology, lifestyle, and methods of study. Predominantly unicellular fungi known as yeasts are usually investigated as living cultures. Methods to characterize yeasts include physiological (growth) tests and experiments to induce a sexual morph; both methods require viable cultures. Thus, the preservation and availability of viable reference cultures are important, and cultures representing reference material are cited in species descriptions. Historical surveys revealed drawbacks and inconsistencies between past practices and modern requirements as stated in the International Code of Nomenclature for Algae, Fungi, and Plants (ICNafp). Improper typification of yeasts is a common problem, resulting in a large number invalid yeast species names. With this opinion letter, we address the problem that culturable microorganisms, notably some fungi and algae, require specific provisions under the ICNafp. We use yeasts as a prominent example of fungi known from cultures. But viable type material is important not only for yeasts, but also for other cultivable Fungi that are characterized by particular morphological structures (a specific type of spores), growth properties, and secondary metabolites. We summarize potential proposals which, in our opinion, will improve the stability of fungal names, in particular by protecting those names for which the reference material can be traced back to the original isolate
Fumaric acid production by fermentation
The potential of fumaric acid as a raw material in the polymer industry and the increment of cost of petroleum-based fumaric acid raises interest in fermentation processes for production of this compound from renewable resources. Although the chemical process yields 112% w/w fumaric acid from maleic anhydride and the fermentation process yields only 85% w/w from glucose, the latter raw material is three times cheaper. Besides, the fermentation fixes CO2. Production of fumaric acid by Rhizopus species and the involved metabolic pathways are reviewed. Submerged fermentation systems coupled with product recovery techniques seem to have achieved economically attractive yields and productivities. Future prospects for improvement of fumaric acid production include metabolic engineering approaches to achieve low pH fermentations
Metabolism-dependent bioaccumulation of uranium by Rhodosporidium toruloides isolated from the flooding water of a former uranium mine
Remediation of former uranium mining sites represents one of the biggest challenges worldwide
that have to be solved in this century. During the last years, the search of alternative
strategies involving environmentally sustainable treatments has started. Bioremediation,
the use of microorganisms to clean up polluted sites in the environment, is considered one
the best alternative. By means of culture-dependent methods, we isolated an indigenous
yeast strain, KS5 (Rhodosporidium toruloides), directly from the flooding water of a former
uranium mining site and investigated its interactions with uranium. Our results highlight
distinct adaptive mechanisms towards high uranium concentrations on the one hand, and
complex interaction mechanisms on the other. The cells of the strain KS5 exhibit high a
uranium tolerance, being able to grow at 6 mM, and also a high ability to accumulate this
radionuclide (350 mg uranium/g dry biomass, 48 h). The removal of uranium by KS5 displays
a temperature- and cell viability-dependent process, indicating that metabolic activity
could be involved. By STEM (scanning transmission electron microscopy) investigations,
we observed that uranium was removed by two mechanisms, active bioaccumulation and
inactive biosorption. This study highlights the potential of KS5 as a representative of indigenous
species within the flooding water of a former uranium mine, which may play a key role
in bioremediation of uranium contaminated sites.This work was supported by the
Bundesministerium fĂŒr Bildung und Forschung
grand nÂș 02NUK030F (TransAqua). Further support
took place by the ERDF-co-financed Grants
CGL2012-36505 and 315 CGL2014-59616R,
Ministerio de Ciencia e InnovaciĂłn, Spain
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