279 research outputs found
Fuzzy judgment in bargaining games : diverse patterns of price determination and transaction in buyer-seller exchange
game theory;bargaining
Threshold effects of habitat fragmentation on fish diversity at landscapes scales
Habitat fragmentation involves habitat loss concomitant with changes in spatial configuration, confounding mechanistic drivers of biodiversity change associated with habitat disturbance. Studies attempting to isolate the effects of altered habitat configuration on associated communities have reported variable results. This variability may be explained in part by the fragmentation threshold hypothesis, which predicts that the effects of habitat configuration may only manifest at low levels of remnant habitat area. To separate the effects of habitat area and configuration on biodiversity, we surveyed fish communities in seagrass landscapes spanning a range of total seagrass area (2-74% cover within 16 000-m2 landscapes) and spatial configurations (1-75 discrete patches). We also measured variation in fine-scale seagrass variables, which are known to affect faunal community composition and may covary with landscape-scale features. We found that species richness decreased and the community structure shifted with increasing patch number within the landscape, but only when seagrass area was low (<25% cover). This pattern was driven by an absence of epibenthic species in low-seagrass-area, highly patchy landscapes. Additional tests corroborated that low movement rates among patches may underlie loss of vulnerable taxa. Fine-scale seagrass biomass was generally unimportant in predicting fish community composition. As such, we present empirical support for the fragmentation threshold hypothesis and we suggest that poor matrix quality and low dispersal ability for sensitive taxa in our system may explain why our results support the hypothesis, while previous empirical work has largely failed to match predictions
Analysis of glycoprotein processing in the endoplasmic reticulum using synthetic oligosaccharides
Protein quality control (QC) in the endoplasmic reticulum (ER) comprises many steps, including folding and transport of nascent proteins as well as degradation of misfolded proteins. Recent studies have revealed that high-mannose-type glycans play a pivotal role in the QC process. To gain knowledge about the molecular basis of this process with well-defined homogeneous compounds, we achieved a convergent synthesis of high-mannose-type glycans and their functionalized derivatives. We focused on analyses of UDP-Glc: glycoprotein glucosyltransferase (UGGT) and ER Glucosidase II, which play crucial roles in glycoprotein QC; however, their specificities remain unclear. In addition, we established an in vitro assay system mimicking the in vivo condition which is highly crowded because of the presence of various biomacromolecules
The troublesome ticks research protocol: Developing a comprehensive, multidiscipline research plan for investigating human tick-associated disease in Australia
In Australia, there is a paucity of data about the extent and impact of zoonotic tick-related illnesses. Even less is understood about a multifaceted illness referred to as Debilitating Symptom Complexes Attributed to Ticks (DSCATT). Here, we describe a research plan for investigating the aetiology, pathophysiology, and clinical outcomes of human tick-associated disease in Australia. Our approach focuses on the transmission of potential pathogens and the immunological responses of the patient after a tick bite. The protocol is strengthened by prospective data collection, the recruitment of two external matched control groups, and sophisticated integrative data analysis which, collectively, will allow the robust demonstration of associations between a tick bite and the development of clinical and pathological abnormalities. Various laboratory analyses are performed including metagenomics to investigate the potential transmission of bacteria, protozoa and/or viruses during tick bite. In addition, multi-omics technology is applied to investigate links between host immune responses and potential infectious and non-infectious disease causations. Psychometric profiling is also used to investigate whether psychological attributes influence symptom development. This research will fill important knowledge gaps about tick-borne diseases. Ultimately, we hope the results will promote improved diagnostic outcomes, and inform the safe management and treatment of patients bitten by ticks in Australia
Magnetic and Charge Correlations in La{2-x-y}Nd_ySr_xCuO_4: Raman Scattering Study
Two aspects in connection with the magnetic properties of
La_{2-x-y}Nd_ySr_xCuO_4 single crystals are discussed. The first is related to
long wavelength magnetic excitations in x = 0, 0.01, and 0.03 La_{2-x}Sr_xCuO_4
detwinned crystals as a function of doping, temperature and magnetic field. Two
magnetic modes were observed within the AF region of the phase diagram. The one
at lower energies was identified with the spin-wave gap induced by the
antisymmetric DM interaction and its anisotropic properties in magnetic field
could be well explained using a canonical form of the spin Hamiltonian. A new
finding was a magnetic field induced mode whose dynamics allowed us to discover
a spin ordered state outside the AF order which was shown to persist in a 9 T
field as high as 100 K above the N\'eel temperature T_N for x = 0.01. For these
single magnon excitations we map out the Raman selection rules in magnetic
fields and demonstrate that their temperature dependent spectral weight is
peaked at the N\'eel temperature. The second aspect is related to phononic and
magnetic Raman scattering in La_{2-x-y}Nd_ySr_xCuO_4 with three doping
concentrations: x = 1/8, y = 0; x = 1/8, y = 0.4; and x = 0.01, y = 0. We
observed that around 1/8 Sr doping and independent of Nd concentration there
exists substantial disorder in the tilt pattern of the CuO_6 octahedra in both
the orthorhombic and tetragonal phases which persist down to 10 K and are
coupled to bond disorder in the cation layers. The weak magnitude of existing
charge/spin modulations in the Nd doped structure did not allow us to detect
specific Raman signatures on lattice dynamics or two-magnon scattering around
2200 cm-1.Comment: 26 pages, 22 figure
Long-term evolution of orbits about a precessing oblate planet. 3. A semianalytical and a purely numerical approach
Construction of a theory of orbits about a precessing oblate planet, in terms
of osculating elements defined in a frame of the equator of date, was started
in Efroimsky and Goldreich (2004) and Efroimsky (2005, 2006). We now combine
that analytical machinery with numerics. The resulting semianalytical theory is
then applied to Deimos over long time scales. In parallel, we carry out a
purely numerical integration in an inertial Cartesian frame. The results agree
to within a small margin, for over 10 Myr, demonstrating the applicability of
our semianalytical model over long timescales. This will enable us to employ it
at the further steps of the project, enriching the model with the tides, the
pull of the Sun, and the planet's triaxiality. Another goal of our work was to
check if the equinoctial precession predicted for a rigid Mars could have been
sufficient to repel the orbits away from the equator. We show that for low
initial inclinations, the orbit inclination reckoned from the precessing
equator of date is subject only to small variations. This is an extension, to
non-uniform precession given by the Colombo model, of an old result obtained by
Goldreich (1965) for the case of uniform precession and a low initial
inclination. However, near-polar initial inclinations may exhibit considerable
variations for up to +/- 10 deg in magnitude. Nevertheless, the analysis
confirms that an oblate planet can, indeed, afford large variations of the
equinoctial precession over hundreds of millions of years, without repelling
its near-equatorial satellites away from the equator of date: the satellite
inclination oscillates but does not show a secular increase. Nor does it show
secular decrease, a fact that is relevant to the discussion of the possibility
of high-inclination capture of Phobos and Deimos
Opposing reactions in coenzyme A metabolism sensitize Mycobacterium tuberculosis to enzyme inhibition
Mycobacterium tuberculosis (Mtb) is the leading infectious cause of death in humans. Synthesis of lipids critical for Mtb’s cell wall and virulence depends on phosphopantetheinyl transferase (PptT), an enzyme that transfers 4′-phosphopantetheine (Ppt) from coenzyme A (CoA) to diverse acyl carrier proteins. We identified a compound that kills Mtb by binding and partially inhibiting PptT. Killing of Mtb by the compound is potentiated by another enzyme encoded in the same operon, Ppt hydrolase (PptH), that undoes the PptT reaction. Thus, loss-of-function mutants of PptH displayed antimicrobial resistance. Our PptT-inhibitor cocrystal structure may aid further development of antimycobacterial agents against this long-sought target. The opposing reactions of PptT and PptH uncover a regulatory pathway in CoA physiology
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