Editorial overview: Membrane traffic and cell polarity

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Community and ecosystem analysis of forests recovering from landslide disturbance: White Mountain National Forest, New Hampshire

Sites recovering from landslide disturbance offer many opportunities to study ecosystem processes under extreme conditions. Landslides reset the topographic, microclimatic, parent material and vegetation state factors of ecosystem development. Water, and nutrient resources following landslides are more heterogenously distributed. Soil structure and development is disrupted. Solar insolation and diurnal temperature fluctuation exceed that of the surrounding forest. Consequently, plant colonization and community succession differ from less severely disturbed sites such as timber harvest or agricultural afforestation. Two chapters of this dissertation address the unique conditions of landslide ecosystem development. Chapter 2 compares historical data collected in 1956 on a chronosequence of landslides in the White Mountain National Forest to data collected 40 years later. Detrended correspondence analysis is used to determine the major driving variables of succession during the two sample periods. The 1956 dataset suggests that site age was the primary driver of succession on this chronosequence. The 1996--98 data showed that elevation affected species composition more than site age following 40 years of succession. Therefore, caution should be used when extrapolating results beyond the range of chronosequence data. Chapter 3 addresses the patterns of nutrient status and cycling on 4 landslide sites of varying age. Foliar and litterfall nutrient content, and the ratios of the macro nutrients, P, K, Ca and Mg with N are compared to observe potential nutrient imbalances and limitation. Litter decay and nutrient dynamics illustrate relative cycling rates of these elements across the chronosequence. Significant correlations of foliage and litterfall P concentration and N:P ratios with site age imply that P may limit ecosystem development on these sites. Chapter 4 is a methods paper that compares the equivalence of forest stand data collected with the point-centered quarter and fixed-area plot methods. Data from the landslide sites and from a mature uneven aged forest provides a range of site conditions for comparison of the two methods. Stand density, basal area, species richness and community structure measurements using the point-centered quarter method did not provide equivalent results with fixed area plot estimates

Fibroblast-derived HGF drives acinar lung cancer cell polarization through integrin-dependent RhoA-ROCK1 inhibition

The formation of lumens in epithelial tissues requires apical-basal polarization of cells, and the co-ordination of this individual polarity collectively around a contiguous lumen. Signals from the Extracellular Matrix (ECM) instruct epithelia as to the orientation of where basal, and thus consequently apical, surfaces should be formed. We report that this pathway is normally absent in Calu-3 human lung adenocarcinoma cells in 3-Dimensional culture, but that paracrine signals from MRC5 lung fibroblasts can induce correct orientation of polarity and acinar morphogenesis. We identify HGF, acting through the c-Met receptor, as the key polarity-inducing morphogen, which acts to activate β1-integrin-dependent adhesion. HGF and ECM-derived integrin signals co-operate via a c-Src-dependent inhibition of the RhoA-ROCK1 signalling pathway via p190A RhoGAP. This occurred via controlling localization of these signalling pathways to the ECM-abutting surface of cells in 3-Dimensional culture. Thus, stromal derived signals can influence morphogenesis in epithelial cells by controlling activation and localization of cell polarity pathways

Species delimitation and phylogeny of a New Zealand plant species radiation

<p>Abstract</p> <p>Background</p> <p>Delimiting species boundaries and reconstructing the evolutionary relationships of late Tertiary and Quaternary species radiations is difficult. One recent approach emphasizes the use of genome-wide molecular markers, such as amplified fragment length polymorphisms (AFLPs) and single nucleotide polymorphisms (SNPs), to identify distinct metapopulation lineages as taxonomic species. Here we investigate the properties of AFLP data, and the usefulness of tree-based and non-tree-based clustering methods to delimit species and reconstruct evolutionary relationships among high-elevation <it>Ourisia </it>species (Plantaginaceae) in the New Zealand archipelago.</p> <p>Results</p> <p>New Zealand <it>Ourisia </it>are shown to comprise a geologically recent species radiation based on molecular dating analyses of ITS sequences (0.4–1.3 MY). Supernetwork analyses indicate that separate tree-based clustering analyses of four independent AFLP primer combinations and 193 individuals of <it>Ourisia </it>produced similar trees. When combined and analysed using tree building methods, 15 distinct metapopulations could be identified. These clusters corresponded very closely to species and subspecies identified on the basis of diagnostic morphological characters. In contrast, Structure and PCO-MC analyses of the same data identified a maximum of 12 and 8 metapopulations, respectively. All approaches resolved a large-leaved group and a small-leaved group, as well as a lineage of three alpine species within the small-leaved group. We were unable to further resolve relationships within these groups as corrected and uncorrected distances derived from AFLP profiles had limited tree-like properties.</p> <p>Conclusion</p> <p><it>Ourisia </it>radiated into a range of alpine and subalpine habitats in New Zealand during the Pleistocene, resulting in 13 morphologically and ecologically distinct species, including one reinstated from subspecies rank. Analyses of AFLP identified distinct metapopulations consistent with morphological characters allowing species boundaries to be delimited in <it>Ourisia</it>. Importantly, Structure analyses suggest some degree of admixture with most species, which may also explain why the AFLP data do not exhibit sufficient tree-like properties necessary for reconstructing some species relationships. We discuss this feature and highlight the importance of improving models for phylogenetic analyses of species radiations using AFLP and SNP data.</p

The dynamism of salt crust patterns on playas

Playas are common in arid environments and can be major sources of mineral dust that can influence global climate. These landforms typically form crusts that limit evaporation and dust emission, modify surface erosivity and erodibility, and can lead to over prediction or under prediction of (1) dust-emission potential and (2) water and heat fluxes in energy balance modeling. Through terrestrial laser scanning measurements of part of the Makgadikgadi Pans of Botswana (a Southern Hemisphere playa that emits significant amounts of dust), we show that over weeks, months, and a year, the shapes of these surfaces change considerably (ridge thrusting of &gt;30 mm/week) and can switch among continuous, ridged, and degraded patterns. Ridged pattern development changes the measured aerodynamic roughness of the surface (as much as 3 mm/week). The dynamic nature of these crusted surfaces must be accounted for in dust entrainment and moisture balance formulae to improve regional and global climate models

St. John\u27s Wort inhibits adipocyte differentiation and induces insulin resistance in adipocytes

Adipocytes are insulin sensitive cells that play a major role in energy homeostasis. Obesity is the primary disease of fat cells and a major risk factor for the development of Type II diabetes, cardiovascular disease, and metabolic syndrome. Obesity and its related disorders result in dysregulation of the mechanisms that control adipocyte gene expression and function. To identify potential novel therapeutic modulators of adipocytes, we screened 425 botanical extracts for their ability to modulate adipogenesis and insulin sensitivity. We observed that less than 2% of the extracts had substantial effects on adipocyte differentiation of 3T3-L1 cells. Two of the botanical extracts that inhibited adipogenesis were extracts from St. John\u27s Wort (SJW). Our studies revealed that leaf and flower, but not root, extracts isolated from SJW inhibited adipogenesis as judged by examining PPARγ and adiponectin levels. We also examined the effects of these SJW extracts on insulin sensitivity in mature 3T3-L1 adipocytes. Both leaf and flower extracts isolated from SJW substantially inhibited insulin sensitive glucose uptake. The specificity of the observed effects was demonstrated by showing that treatment with SJW flower extract resulted in a time and dose dependent inhibition of insulin stimulated glucose uptake. SJW is commonly used in the treatment of depression. However, our studies have revealed that SJW may have a negative impact on adipocyte related diseases by limiting differentiation of preadipocytes and significantly inducing insulin resistance in mature fat cells. © 2009 Elsevier Inc. All rights reserved

Afadin orients cell division to position the tubule lumen in developing renal tubules

In many types of tubules, continuity of the lumen is paramount to tubular function, yet how tubules generate lumen continuity in vivo is not known. We recently found the F-actin binding protein Afadin is required for lumen continuity in developing renal tubules, though its mechanism of action remains unknown. Here we demonstrate Afadin is required for lumen continuity by orienting the mitotic spindle during cell division. Using an in vitro 3D cyst model, we find Afadin localizes to the cell cortex adjacent to the spindle poles and orients the mitotic spindle. In tubules, cell division may be oriented relative to two axes, longitudinal and apical-basal. Unexpectedly, in vivo examination of early stage developing nephron tubules reveals cell division is not oriented in the longitudinal (or planar polarized) axis. However, cell division is oriented perpendicular to the apical-basal axis. Absence of Afadin in vivo leads to misorientation of apical-basal cell division in nephron tubules. Together these results support a model whereby Afadin determines lumen placement by directing apical-basal spindle orientation, which generates a continuous lumen and normal tubule morphogenesis