Use of steady-state and time-resolved fluorescence spectroscopy as a tool to investigate photophysics of biologically and environmentally relevant systems

Steady-state and time-resolved fluorescence spectroscopy are among the most widespread and powerful tools in the study of physical, chemical and biological systems. In this thesis, we discuss the use of these technologies to study range of important processes occurring on timescales from femtoseconds (10-15 s) to nanoseconds (10-9 s). In particular, we employ the techniques of time-correlated single photon counting and fluorescence upconversion, which are described in detail in subsequent chapter. The physical problems that we address with these technologies are: solvation dynamics in various systems, especially proteins; the use of ionic liquids for the hydrolysis of cellulose; and stereoselective photophysics in chiral ionic liquids

Enzyme-Catalyzed Hydrolysis of Cellulose in Ionic Liquids: A Green Approach Toward the Production of Biofuels

We investigated the reactivity and stability of a commercial mixture of cellulases in eight ionic liquids by optical and calorimetric techniques. First, hydrolysis by cellulases from Tricoderma reesei in these ionic liquids was benchmarked against that in aqueous buffer. Only 1-methylimidazolium chloride (mim Cl) and tris-(2-hydroxyethyl)methylammonium methylsulfate (HEMA) provided a medium in which hydrolysis could occur. While hydrolysis at 65 °C is initially much faster in buffer than in these two liquids, it reaches a plateau after 2 h, whereas the reaction progresses monotonically in the two ionic liquids. This difference in the rate of hydrolysis is largely attributed to two factors: (1) the higher viscosity of the ionic liquids and (2) the enzymes are irreversibly denatured at 50 °C in buffer while they are stable to temperatures as high as 115 °C in HEMA. We explored whether fluorescence quenching of aromatic amino acids of the enzymes was indeed a signature of protein denaturation, as has been suggested in the literature, and concluded that quenching is not necessarily associated with denaturation. When it does occur, for example, in the presence of ionic liquids formed from imidazolium cations and chloride anions, it arises from the imidazolium rather than the chloride. Finally, we conclude that HEMA is a promising, novel, green medium for performing cellulose hydrolysis reactions to convert biomass into biofuels. Because of the thermal stability it imparts to enzymes, its ability to solubilize biomass, and the fact that it does not quench tryptophyl fluorescence (thus permitting monitoring of the enzymes by fluorescence spectroscopy), HEMA provides an ideal starting point for the design of ionic liquids, not only for the hydrolysis of biomass, but also for use with a wide spectrum of enzymatic reactions

Supercontinuum Stimulated Emission Depletion Fluorescence Lifetime Imaging

Supercontinuum (SC) stimulated emission depletion (STED) fluorescence lifetime imaging is demonstrated by using time-correlated single-photon counting (TCSPC) detection. The spatial resolution of the developed STED instrument was measured by imaging monodispersed 40-nm fluorescent beads and then determining their fwhm, and was 36 ± 9 and 40 ± 10 nm in the Xand Y coordinates, respectively. The same beads measured by confocal microscopy were 450 ± 50 and 430 ± 30 nm, which is larger than the diffraction limit of light due to underfilling the microscope objective. Underfilling the objective and time gating the signal were necessary to achieve the stated STED spatial resolution. The same fluorescence lifetime (2.0 ± 0.1 ns) was measured for the fluorescent beads by using confocal or STED lifetime imaging. The instrument has been applied to study Alexa Fluor 594-phalloidin labeled F-actin-rich projections with dimensions smaller than the diffraction limit of light in cultured cells. Fluorescence lifetimes of the actin-rich projections range from 2.2 to 2.9 ns as measured by STED lifetime imaging

Analytical and data strategy for continuous downstream manufacturing

As advances emerge in developing continuous biomanufacturing processes, there is an increased need to deploy PAT tools to characterize, monitor, and control key quality attributes and a criticality to have a data infrastructure to support the immense amount of information being generated. While the desire for these tools exists in traditional batch processing, in a continuous operation, these become a requirement to ensure consistent product quality and enable proactive approaches in maintaining performance. The ultimate goal is to deploy PAT tools to reliably provide real-time information on product and process impurities throughout the entire operation. However, in its current state, there is a reliance on a mixture of inline, at-line, and offline technologies. By identifying the time criticality of CQAs, efforts can be focused on where to prioritize real-time measurements or instead, quicker or more automated testing for a subset of analytics. This work describes the application of this approach in the development of small-scale, compact in-line UV instruments to measure real-time protein concentration and in the integration of an automated sampling system with at-line and offline instrumentation for in-process impurity characterization. Introduction of these PAT tools add to the complexity of the data infrastructure as it introduces requirements for platforms capable of supporting spectral data, chemometric model deployment, spectral instrument management, and time-alignment of discrete data. With the vast amount of information produced in a continuous environment, interface and analysis tools need to be developed so that any end-user can digest data into a format that easily allows them to gain insight into an ongoing batch. This work will highlight the data architecture of the continuous platform, with a focus on software tools selected for aggregation and real-time data visualization. The capabilities of these software packages were demonstrated through a proof-of-concept study using single-pass tangential flow filtration (SPTFF) as a model unit operation, which allowed integration of continuous, spectral, and discrete data. These tools allowed scientists to go from viewing real-time data across multiple, equipment-specific software to one consolidated interface, which in turn reduced time spent in compiling data for analysis and reporting. In addition, advanced capabilities of deploying model predictive control in SPTFF were demonstrated to show the application of a closed loop process control in continuous manufacturing

Considerations for the Construction of the Solvation Correlation Function and Implications for the Interpretation of Dielectric Relaxation in Proteins

The dielectric response of proteins is conveniently measured by monitoring the time-dependent Stokes shift of an associated chromophore. The interpretation of these experiments depends critically upon the construction of the solvation correlation function, C(t), which describes the time-dependence of the Stokes shift and hence the dielectric response of the medium to a change in charge distribution. We provide an analysis of various methods of constructing this function and review selected examples from the literature. The naturally occurring amino acid, tryptophan, has been frequently used as a probe of solvation dynamics in proteins. Its nonexponential fluorescence decay has stimulated the generation of an alternative method of constructing C(t). In order to evaluate this method, we have studied a system mimicking tryptophan. The system is comprised of two coumarins (C153 and C152) having different fluorescence lifetimes but similar solvation times. The coumarins are combined in different proportions in methanol to make binary probe mixtures. We use fluorescence upconversion spectroscopy to obtain wavelength-resolved kinetics of the individual coumarins in methanol as well as the binary mixtures of 75:25, 50:50, and 25:75 of C153:C152. The solvation correlation functions are constructed for these systems using different methods and are compared

Structure and Dynamics of the 1-Hydroxyethyl-4-amino-1,2,4-triazolium Nitrate High-Energy Ionic Liquid System

An investigation of the structure and dynamics of the high-energy ionic liquid, 1-hydroxyethyl-4-amino-1,2,4-triazolium nitrate (HEATN), was undertaken. Both experimental and computational methods were employed to understand the fundamental properties, characteristics, and behavior of HEATN. The charge separation, according to the electrostatic potential derived charges, was assessed. The MP2 (second-order perturbation theory) geometry optimizations find six dimer and five tetramer structures and allow one to see the significant highly hydrogen bonded network predicted within the HEATN system. Due to the prohibitive scaling of ab initio methods, the fragment molecular orbital (FMO) method was employed and assessed for feasibility with highly energetic ionic liquids using HEATN as a model system. The FMO method was found to adequately treat the HEATN ionic liquid system as evidenced by the small relative error obtained. The experimental studies involved the investigation of the solvation dynamics of the HEATN system via the coumarin 153 (C153) probe at five different temperatures. The rotational dynamics through the HEATN liquid were also measured using C153. Comparisons with previously studied imidazolium and phosphonium ionic liquids show surprising similarity. To the authors’ knowledge, this is the first experimental study of solvation dynamics in a triazolium-based ionic liquid

Solvation Dynamics in Protein Environments: Comparison of Fluorescence Upconversion Measurements of Coumarin 153 in Monomeric Hemeproteins with Molecular Dynamics Simulations

The complexes of the fluorescence probe coumarin 153 with apomyoglobin and apoleghemoglobin are used as model systems to study solvation dynamics in proteins.Time-resolved Stokes shift experiments are compared with molecular dynamics simulations, and very good agreement is obtained. The solvation of the coumarin probe is very rapid with approximately 60% occurring within 300fs and is attributed to interactions with water (or possibly to the protein itself). Differences in the solvation relaxation (or correlation) function C(t) for the two proteins are attributed to differences in their hemepockets

Influence of Chiral Ionic Liquids on Stereoselective Fluorescence Quenching by Photoinduced Electron Transfer in a Naproxen Dyad

In a previous study of a naproxen dyad in a pair of N-methylimidazoliummethyl menthylether−NTf2 chiral ionic liquids (J. Phys. Chem. B 2008, 112, 7555), we observed that though intramolecular electron transfer was impeded, a consistent small stereodifferentiation in the fluorescence lifetime of the dyad was obtained. We proposed that this discrimination was purely electronic in nature and did not arise from geometrical effects, which can influence nonradiative rate processes, such as intramolecular electron transfer. In our present work, we have studied the interaction of the same chiral naproxen dyad molecule in both the previously studied menthyl-based NTf2 ionic liquids and also in bis(tertrabutylphosphonium) (TBP) d-,l-tartrate ionic liquids. Unlike in the menthyl-based IL pair, the amount of quenching is different in the bis(TBP) tartrate enantiomeric liquids and the tartrate enantiomers have a different temperature dependence on the nonradiative rate of the dyad. This chiral discrimination most likely arises from the steric effects of the different conformations of the chiral molecules. We have shown that the viscosity and polarity of the solvents can influence the rate of electron transfer. On the other hand, no such electron transfer quenching is observed in the menthyl-based NTf2 IL solvents. To our knowledge, this is the first example of chiral ionic liquids inducing a stereoselective fluorescence quenching by photoinduced, intramolecular electron transfer

Dynamic Solvation in Phosphonium Ionic Liquids: Comparison of Bulk and Micellar Systems and Considerations for the Construction of the Solvation Correlation Function, C(t)

Dynamic solvation of the dye coumarin 153 is studied in a phosphonium ionic liquid:  hexadecyltributylphosphonium bromide, [(C4)3C16P+][Br-]. It forms micelles in water, and the bulk also exists as a liquid under our experimental conditions. This system permits a comparison with an imidazolium ionic liquid studied earlier, which also formed micelles in water (J. Phys. Chem. A 2006, 110, 10725−10730). We conclude that our analysis of the comparable situation in a phosphonium liquid is not as definitive as we had proposed earlier, i.e., that the majority of the early-time solvation arises from the organic cation. Part of the difficulty in performing this analysis is most likely due to the amount of water that is associated with the micelle. In the course of this work, we have focused on the calculation of the solvation correlation function, C(t), and investigated how it depends upon the methods with which the “zero-time” spectrum is constructed