Forest Isoprene Emissions: New Insights from a Novel Field Instrument

Isoprene is an important biogenic volatile organic compound (VOC) in natural systems. Its emission by certain species of plants depends on solar radiation levels and on temperature, as well as other factors. Once in the atmosphere, it is rapidly transported and oxidised, and the subsequent chemistry of isoprene plays a significant part in determining the oxidising capacity of the troposphere, and therefore atmospheric composition and aerosol formation. The emission of isoprene is also important to the global carbon cycle and the carbon budget of the biosphere. Measurements have highlighted the great spatial and temporal variation of isoprene concentrations within forests and across different forest types, presenting a challenge for understanding overall emissions. Current understanding of isoprene is limited by the lack of availability of suitable instrumentation for deployment in key field sites. In this thesis the development of a novel portable gas chromatography instrument suitable for challenging field environments, the iDirac, is described. Current estimates for global isoprene emission attribute 70% to tropical forests, but these are under-sampled. This thesis describes a tropical field campaign with measurements of isoprene from tropical trees. The distribution of isoprene within a canopy is poorly understood and existing models do not capture effectively the forest vertical isoprene gradient. The vertical concentration gradient is investigated in a novel measurement campaign over summer 2018 in a temperate forest. Measurements at different canopy heights were taken with maximum isoprene concentrations of 8 ppb. Insolation at the top of the canopy drives the vertical gradient. The forest experienced stress as a result of higher temperatures and low rainfall in the 2018 heatwave and showed elevated isoprene levels. A new simple conceptual model is described, CamCan, which simulates isoprene concentration at different levels in the forest canopy. The model is used to calculate fluxes from the forest and an annual emission of 2.0 Mg is estimated for the 2018 season

iDirac: a field-portable instrument for long-term autonomous measurements of isoprene and selected VOCs

The iDirac is a new instrument to measure selected hydrocarbons in the remote atmosphere. A robust design is central to its specifications, with portability, power efficiency, low gas consumption and autonomy as the other driving factors in the instrument development. The iDirac is a dual-column isothermal oven gas chromatograph with photoionisation detection (GC-PID). The instrument is designed and built in-house. It features a modular design, with the novel use of open-source technology for accurate instrument control. Currently configured to measure biogenic isoprene, the system is suitable for a range of compounds. For isoprene measurements in the field, the instrument precision (relative standard deviation) is ±10 %, with a limit of detection down to 38 pmol mol−1 (or ppt). The instrument was first tested in the field in 2015 during a ground-based campaign, and has since shown itself suitable for deployment in a variety of environments and platforms. This paper describes the instrument design, operation and performance based on laboratory tests in a controlled environment as well as during deployments in forests in Malaysian Borneo and central England

Isoprene hotspots at the Western Coast of Antarctic Peninsula during MASEC′16

Isoprene (C⁠5H⁠8) plays an important role in the formation of surface ozone (O3) and the secondary organic aerosol (SOA) which contributed to the climate change. This study aims to determine hourly distribution of tropospheric isoprene over the Western Coast of Antarctic Peninsula (WCAP) during the Malaysian Antarctic Scientific Expedition Cruise 2016 (MASEC′16). In-situ measurements of isoprene were taken using a custom-built gas chromatography with photoionization detector, known as iDirac. Biological parameters such as chlorophyll a (chl-a) and particulate organic carbon (POC) were compared to the in-situ isoprene measurements. Significant positive correlation was observed between isoprene and POC concentrations (r2=0.67, p<0.001), but not between isoprene and chl-a. The hotspots of isoprene over maritime Antarctic were then were investigated using NAME dispersion model reanalysis. Measurements showed that isoprene mixing ratio were the highest over region of King George Island, Deception Island and Booth Island with values of ∼5.0, ∼0.9 and ∼5.2ppb, respectively. Backward trajectory analysis showed that air masses may have lifted the isoprene emitted by marine algae. We believe our findings provide valuable data set of isoprene estimation over the under sampled WCAP

Continuous isoprene measurements in a UK temperate forest for a whole growing season: effects of drought stress during the 2018 heatwave

Isoprene concentrations were measured at four heights below, within and above the forest canopy in Wytham Woods (UK) throughout the summer of 2018 using custom-built gas chromatographs (the iDirac). These observations were complemented with selected ancillary variables, including air temperature, photosynthetically active radiation (PAR), occasional leaf gas exchange measurements and satellite retrievals of normalized difference vegetation and water indices (NDVI and NDWI). The campaign overlapped with a long and uninterrupted heatwave accompanied by moderate drought. Peak isoprene concentrations during the heatwave-drought were up to a factor of 4 higher than those before or after. Higher temperatures during the heatwave could not account for all the observed isoprene; the enhanced abundances correlated with drought stress. Leaf-level emissions confirmed this and also included compounds associated with ecosystem stress. This work highlights that a more in-depth understanding of the effects of drought stress is required to better characterize isoprene emissions

Atmospheric isoprene measurements reveal larger-than-expected Southern Ocean emissions

Isoprene is a key trace component of the atmosphere emitted by vegetation and other organisms. It is highly reactive and can impact atmospheric composition and climate by affecting the greenhouse gases ozone and methane and secondary organic aerosol formation. Marine fluxes are poorly constrained due to the paucity of long-term measurements; this in turn limits our understanding of isoprene cycling in the ocean. Here we present the analysis of isoprene concentrations in the atmosphere measured across the Southern Ocean over 4 months in the summertime. Some of the highest concentrations ( >500 ppt) originated from the marginal ice zone in the Ross and Amundsen seas, indicating the marginal ice zone is a significant source of isoprene at high latitudes. Using the United Kingdom Earth System Model we show that current estimates of sea-to-air isoprene fluxes underestimate observed isoprene by a factor >20. A daytime source of isoprene is required to reconcile models with observations. The model presented here suggests such an increase in isoprene emissions would lead to >8% decrease in the hydroxyl radical in regions of the Southern Ocean, with implications for our understanding of atmospheric oxidation and composition in remote environments, often used as proxies for the pre-industrial atmosphere.V.F. and N.R.P.H. were supported in the analysis of the data by UKRI NERC project Southern Ocean Clouds (NE/T006366/1)

Exploring the coupled ocean and atmosphere system with a data science approach applied to observations from the Antarctic Circumnavigation Expedition

The Southern Ocean is a critical component of Earth's climate system, but its remoteness makes it challenging to develop a holistic understanding of its processes from the small scale to the large scale. As a result, our knowledge of this vast region remains largely incomplete. The Antarctic Circumnavigation Expedition (ACE, austral summer 2016/2017) surveyed a large number of variables describing the state of the ocean and the atmosphere, the freshwater cycle, atmospheric chemistry, and ocean biogeochemistry and microbiology. This circumpolar cruise included visits to 12 remote islands, the marginal ice zone, and the Antarctic coast. Here, we use 111 of the observed variables to study the latitudinal gradients, seasonality, shorter-term variations, geographic setting of environmental processes, and interactions between them over the duration of 90ĝ€¯d. To reduce the dimensionality and complexity of the dataset and make the relations between variables interpretable we applied an unsupervised machine learning method, the sparse principal component analysis (sPCA), which describes environmental processes through 14 latent variables. To derive a robust statistical perspective on these processes and to estimate the uncertainty in the sPCA decomposition, we have developed a bootstrap approach. Our results provide a proof of concept that sPCA with uncertainty analysis is able to identify temporal patterns from diurnal to seasonal cycles, as well as geographical gradients and "hotspots"of interaction between environmental compartments. While confirming many well known processes, our analysis provides novel insights into the Southern Ocean water cycle (freshwater fluxes), trace gases (interplay between seasonality, sources, and sinks), and microbial communities (nutrient limitation and island mass effects at the largest scale ever reported). More specifically, we identify the important role of the oceanic circulations, frontal zones, and islands in shaping the nutrient availability that controls biological community composition and productivity; the fact that sea ice controls sea water salinity, dampens the wave field, and is associated with increased phytoplankton growth and net community productivity possibly due to iron fertilisation and reduced light limitation; and the clear regional patterns of aerosol characteristics that have emerged, stressing the role of the sea state, atmospheric chemical processing, and source processes near hotspots for the availability of cloud condensation nuclei and hence cloud formation. A set of key variables and their combinations, such as the difference between the air and sea surface temperature, atmospheric pressure, sea surface height, geostrophic currents, upper-ocean layer light intensity, surface wind speed and relative humidity played an important role in our analysis, highlighting the necessity for Earth system models to represent them adequately. In conclusion, our study highlights the use of sPCA to identify key ocean-atmosphere interactions across physical, chemical, and biological processes and their associated spatio-temporal scales. It thereby fills an important gap between simple correlation analyses and complex Earth system models. The sPCA processing code is available as open-access from the following link: https://renkulab.io/gitlab/ACE-ASAID/spca-decomposition (last access: 29 March 2021). As we show here, it can be used for an exploration of environmental data that is less prone to cognitive biases (and confirmation biases in particular) compared to traditional regression analysis that might be affected by the underlying research question

Isoprene hotspots at the Western Coast of Antarctic Peninsula during MASEC′16

Isoprene (C5H8) plays an important role in the formation of surface ozone (O3) and the secondary organic aerosol (SOA) which contributed to the climate change. This study aims to determine hourly distribution of tropospheric isoprene over the Western Coast of Antarctic Peninsula (WCAP) during the Malaysian Antarctic Scientific Expedition Cruise 2016 (MASEC′16). In-situ measurements of isoprene were taken using a custom-built gas chromatography with photoionization detector, known as iDirac. Biological parameters such as chlorophyll a (chl-a) and particulate organic carbon (POC) were compared to the in-situ isoprene measurements. Significant positive correlation was observed between isoprene and POC concentrations (r2 = 0.67, p < 0.001), but not between isoprene and chl-a. The hotspots of isoprene over maritime Antarctic were then were investigated using NAME dispersion model reanalysis. Measurements showed that isoprene mixing ratio were the highest over region of King George Island, Deception Island and Booth Island with values of ∼5.0, ∼0.9 and ∼5.2 ppb, respectively. Backward trajectory analysis showed that air masses may have lifted the isoprene emitted by marine algae. We believe our findings provide valuable data set of isoprene estimation over the under sampled WCAP

Continuous isoprene measurements in a UK temperate forest for a whole growing season:effects of drought stress during the 2018 heatwave

Isoprene concentrations were measured at four heights below, within, and above the forest canopy in Wytham Woods (United Kingdom) throughout the summer of 2018 using custom‐built gas chromatographs (the iDirac). These observations were complemented with selected ancillary variables, including air temperature, photosynthetically active radiation, occasional leaf gas exchange measurements, and satellite retrievals of normalized difference vegetation and water indices. The campaign overlapped with a long and uninterrupted heatwave accompanied by moderate drought. Peak isoprene concentrations during the heatwave‐drought were up to a factor of 4 higher than those before or after. Higher temperatures during the heatwave could not account for all the observed isoprene; the enhanced abundances correlated with drought stress. Leaf‐level emissions confirmed this and also included compounds associated with ecosystem stress. This work highlights that a more in‐depth understanding of the effects of drought stress is required to better characterize isoprene emissions

Modelling the effect of the 2018 summer heatwave and drought on isoprene emissions in a UK woodland

Projected future climatic extremes such as heatwaves and droughts are expected to have major impacts on emissions and concentrations of biogenic volatile organic compounds (bVOCs) with potential implications for air quality, climate, and human health. While the effects of changing temperature and photosynthetically active radiation (PAR) on the synthesis and emission of isoprene, the most abundant of these bVOCs, are well-known, the role of other environmental factors such as soil moisture stress are not fully understood and are therefore poorly represented in land surface models. As part of the Wytham Isoprene iDirac Oak Tree Measurements (WIsDOM) campaign, continuous measurements of isoprene mixing ratio were made throughout the summer of 2018 in Wytham Woods, a mixed deciduous woodland in southern England. During this time, the United Kingdom experienced a prolonged heatwave and drought, and isoprene mixing ratios were observed to increase by more than 400% at Wytham Woods under these conditions. We applied the state-of-the-art FORest Canopy-Atmosphere Transfer (FORCAsT) canopy exchange model to investigate the processes leading to these elevated concentrations. We found that although current isoprene emissions algorithms reproduced observed mixing ratios in the canopy before and after the heatwave, the model underestimated observations by ~40% during the heatwave-drought period implying that models may substantially underestimate the release of isoprene to the atmosphere in future cases of mild or moderate drought. Stress-induced emissions of isoprene based on leaf temperature and soil water content were incorporated into current emissions algorithms leading to significant improvements in model output. A combination of soil water content, leaf temperature and rewetting emission bursts provided the best model- measurement fit with a 50% improvement compared to the baseline model. Our results highlight the need for more long-term ecosystem-scale observations to enable improved model representation of atmosphere-biosphere interactions in a changing global climate

Cu-Catalyzed Aerobic Oxidative Cyclization of Guanidylpyridines and Derivatives

A new method for the straightforward synthesis of 2-amino-[1,2,4]­triazolo­[1,5-<i>a</i>]­pyridines and derivatives is presented. The target products are synthesized in high yields from guanidylpyridines and analogues via copper-catalyzed N–N coupling. The present methodology shows a wide scope, tolerating not only different substituents on the pyridine ring but also different heterocylic rings such as pyrazines, pyrimidines, and pyridazines