11 research outputs found
FTMAP: extended protein mapping with user-selected probe molecules
- Author
- Publication venue
- 'Oxford University Press (OUP)'
- Publication date
- Field of study
No full textThe FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins
- Author
- A Bakan
- A Ciulli
- A Ivetac
- A Jakalian
- A Miranker
- AA Bogan
- AC English
- AC English
- AR Sielecki
- AT Laurie
- ATR Laurie
- B Huang
- Bing Xia
- BR Brooks
- BS Zerbe
- C Mattos
- C Mattos
- CD Thanos
- CH Ngan
- CH Ngan
- D Beglov
- D Kozakov
- DA Erlanson
- David R Hall
- DC Rees
- DG Levitt
- DH Hall
- Dima Kozakov
- Dmitri Beglov
- DR Hall
- DR Hall
- E Zhang
- EA Villar
- EA Villar
- EP Raman
- GP Brady Jr.
- GY Chuang
- GY Chuang
- H Yamaguchi
- HM Berman
- HN Bramson
- J Rahuel
- J Rahuel
- J Seco
- J Wang
- J Wang
- K Michelsen
- KC Chou
- KN Allen
- KW Lexa
- L Deng
- L Votapka
- Laurie E Grove
- LE Grove
- Lingqi Luo
- M Brylinski
- M Dechene
- M Hendlich
- M Hernandez
- M Schaefer
- M Silberstein
- MJ Hartshorn
- MK Haider
- MN Wass
- MR Landon
- MR Landon
- MR Landon
- N Howard
- N Howard
- N Howard
- N Tuncbag
- NM OâČBoyle
- O Keskin
- PJ Goodford
- PJ Hajduk
- R Brenke
- R Guerois
- S Dennis
- S Uhrinova
- S Vajda
- Sandor Vajda
- Scott E Mottarella
- SY Wu
- T Bohnuud
- T Bohnuud
- T Clackson
- T Kortemme
- TA Binkowski
- TA Halgren
- Tanggis Bohnuud
- W Yu
- WL DeLano
- WL DeLano
- X Zhu
- XT Zhu
- XY Qiu
- Y Alexeev
- YY Kuttner
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
No full textGuanine to Inosine Substitution Leads to Large Increases in the Population of a Transient G·C Hoogsteen Base Pair
- Author
- Aishima J.
- Alvey H. S.
- Bohnuud T.
- Cuesta-Seijo J. A.
- Evgenia N. Nikolova
- Frederick Stull
- Hashim M. Al-Hashimi
- Hoogsteen K.
- Horowitz S.
- Hsu G. W.
- Kitayner M.
- Korzhnev D. M.
- Kow Y. W.
- Krepl M.
- Leonard G. A.
- Makarova A. V.
- Massi F.
- Nair D. T.
- Natrajan G.
- Nikolova E. N.
- Nikolova E. N.
- Nikolova E. N.
- Nikolova E. N.
- Nordmann P. L.
- Palmer A. G.
- Patikoglou G. A.
- Rice P. A.
- Siegfried N. A.
- Yang H.
- Publication venue
- 'American Chemical Society (ACS)'
- Publication date
- Field of study
No full textWidespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics
- Author
- A Sekhar
- AG Palmer 3rd
- AH Wang
- AL Hansen
- AR Fersht
- AV Makarova
- B Honig
- D Coman
- DE Gilbert
- DP Zimmer
- DR Ronning
- DT Nair
- E Cubero
- E Cubero
- EN Nikolova
- EN Nikolova
- EN Nikolova
- EN Nikolova
- F Delaglio
- G Ughetto
- GA Patikoglou
- H Akaike
- H Yang
- J Aishima
- J SantaLucia Jr
- J Wang
- JR Bothe
- K Hoogsteen
- K Liu
- L Spyracopoulos
- M Gueron
- M Kitayner
- MJ Doktycz
- MN Schulz
- NG Abrescia
- NG Abrescia
- P Neudecker
- P Pelupessy
- PA Rice
- R Rohs
- RC Harris
- RE Johnson
- SC Ha
- T Bohnuud
- T Schwartz
- VZ Miloushev
- W Yang
- Y Zhang
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
No full textInhibition of protein interactions: co-crystalized proteinâprotein interfaces are nearly as good as holo proteins in rigid-body ligand docking
- Author
- A Clauset
- A Metz
- AA Bliznyuk
- AM Ruvinsky
- AM Ruvinsky
- AP Higueruelo
- B Ford
- BK Shoichet
- C Camacho
- CJ Camacho
- D Kozakov
- D Padhorny
- D Zaidman
- DK Johnson
- DK Johnson
- DR Koes
- E Katchalski-Katzir
- H Shi
- HM Berman
- I Anishchenko
- I Kufareva
- I Tuszynska
- IA Vakser
- IA Vakser
- IA Vakser
- IA Vakser
- Ilya A. Vakser
- J Janin
- J Skolnick
- J Zhao
- JC Fuller
- KA Porter
- M Brylinski
- M Gao
- M Hendlich
- M Levitt
- MA Kuenemann
- MC Smith
- MF Lensink
- MH Kang
- MJ Basse
- MJ Gorczynski
- MP Stumpf
- N London
- NS Blom
- O Ulucan
- P Bamborough
- P Liu
- P Paaventhan
- Petras J. Kundrotas
- PJ Kundrotas
- PJ Kundrotas
- PJ Kundrotas
- QC Zhang
- R Gowthaman
- R Sinha
- R Sinha
- S Eyrisch
- Saveliy Belkin
- SE Acuner Ozbabacan
- T Bohnuud
- T Cierpicki
- Y Zhang
- Z Huang
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
No full textUnderstanding the StructureâFunction Relationship of Lysozyme Resistance in Staphylococcus aureus
- Author
- Agostino M.
- Anju C. Pushkaran
- Ashish P.
- Bera A.
- Bera A.
- Bera A.
- Bernstein F. C.
- Biswas R.
- Bohnuud T.
- C. Gopi Mohan
- Calimet N.
- Campbell A. J.
- Clarke A. J.
- Davis K. M.
- Davis K. M.
- DĂŒring K.
- Edwards A. M.
- Fedtke I.
- Friedrich Götz
- Friesner R. A.
- Guariglia-Oropeza V.1.
- Gupta S.
- Herbert S.
- Iordanescu S.
- Jain V.
- Karplus M.
- Kelly J. A.
- Koshland D. E.
- Kumar V.
- Laaberki M. H.
- Laurent H.
- Meroueh S. O.
- Namrata Nataraj
- Nisha Nair
- Ogata M.
- Perera S.
- Peschel A.
- Phillips D. C.
- Phillips D. C.
- Post C. B.
- Raja Biswas
- Saari K. M.
- Sukhithasri V.
- Torsteinsdottir I.
- Varma P.
- Veiga P.
- Victor M. R.
- Vocadlo D. J.
- Vollmer W.
- Publication venue
- 'American Chemical Society (ACS)'
- Publication date
- Field of study
No full textNon-dissociative structural transitions of the Watson-Crick and reverse Watson-Crick Đ·й DNA base pairs into the Hoogsteen and reverse Hoogsteen forms
- Author
- AA El-Sayed
- AEV Haschemeyer
- AV Iogansen
- B Sathyamoorthy
- BE GarcĂa-Moreno
- C Lecomte
- C Lee
- C Peng
- C Yang
- CF Matta
- CF Matta
- CF Matta
- CF Matta
- CF Matta
- DM Govorun
- DM Hovorun
- DM Hovorun
- E Cubero
- E Cubero
- E Espinosa
- E Stofer
- EI Zagryadskaya
- EL Mertz
- EN Nikolova
- EN Nikolova
- ES Szymanski
- FJ Acosta-Reyes
- H Zhou
- I Cukrowski
- I Mata
- I Negi
- IJ Kimsey
- J Donohue
- J Petrushka
- J Pous
- J SĂŒhnel
- J Tirado-Rives
- JA Sordo
- JA Sordo
- K Hoogsteen
- K Liu
- L Campos
- LR Felske
- LR Rutledge
- M Frank-Kamenetskii
- M Gutowski
- M Szabat
- MA Palafox
- MJ Frisch
- MJS Dewar
- MY Ye
- NA Tchurikov
- NG Abrescia
- NG Abrescia
- OO Brovarets
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- OO Brovaretsâ
- P Hippel von
- PC Hariharan
- R Krishnan
- R Lavery
- RA Kendall
- SF Boys
- SN Maximoff
- ST Bayley
- T Bohnuud
- TY Nikolaienko
- V Zoete
- VI Danilov
- VI Poltev
- VR Parvathy
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
No full textHot-spot identification on a broad class of proteins and RNA suggest unifying principles of molecular recognition
- Author
- A Boularot
- A Czarna
- A Davidson
- A Feki
- A Lax
- A Miranker
- A Mullard
- A Rojas
- A Sheth
- A Winter
- A Winter
- A Wlodawer
- A Wlodawer
- A Wlodawer
- AE Eakin
- AI Roca
- AM Lee
- AT Danishefsky
- B Hu
- BD Dorsey
- BL Grasberger
- C Indiani
- C Li
- C Mattos
- C Mattos
- C Mattos
- D Housset
- D Kozakov
- D Marcellino
- DA Erlanson
- DA Hay
- DE Scott
- DH Hall
- DJ Adams
- DL Hughes
- E Edink
- EF Meyer Jr.
- EH Mashalidis
- EJ Peterson
- EL Mehler
- EP Raman
- EP Raman
- F Guarnieri
- F Guarnieri
- F Guarnieri
- F Guarnieri
- F Guarnieri
- F Huguet
- F Liu
- Frank Guarnieri
- G Blaha
- G Buhrman
- G Chessari
- G Mousseau
- GF Hao
- GM Popowicz
- GM Turino
- GY Chuang
- H Czapinska
- H Li
- H Randhawa
- HL Silvestre
- I Massova
- I Van Molle
- Ian S. Cloudsdale
- J Egger
- J Kelley De Zutter
- J Mikuni
- J Rouhana
- JA Pierce
- JC Bell
- JE Gable
- JL Kulp 3rd
- JL Kulp 3rd
- John L. Kulp
- John L. Kulp
- JY Guan
- JZ Sexton
- K Aktories
- K Moffett
- K Murray
- KD Berndt
- KN Allen
- L Qin
- LK Liu
- LS Steffens
- M Amano
- M Kumar
- M Mezei
- M Vallee
- MA Kohanski
- MA Navia
- Manuela Helmer-Citterich
- MR Sawaya
- MS Golden
- MW Bradbury
- NL Wernick
- P Cui
- P Siegert
- P Wellendorph
- PJ Goodford
- R Corey
- R Wilcken
- RM Miller
- RS Yedidi
- S Dennis
- S Massari
- S Waaijers
- SB Shuker
- SF Singleton
- T Alber
- T Bohnuud
- T Katada
- TG Davies
- TJ Wigle
- TJ Wigle
- TL Joseph
- U Zahringer
- V Prashar
- WR Moore Jr
- YK Cheng
- Z Chen
- Z Chilingaryan
- Z Liu
- Z Wang
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- Field of study
No full textIntermolecular CH···O/N H-bonds in the biologically important pairs of natural nucleobases: a thorough quantum-chemical study
- Author
- Abrescia N. G.
- Abrescia N. G.
- Aishima J.
- Alabugin I. V.
- Allerhand A.
- Asensio A.
- Bacolla A.
- Bader R. F. W.
- Bader R. F. W.
- Bader R. F. W.
- Becke A. D.
- Berger I.
- Bohnuud T.
- Bondi A. J.
- Borissova O. F.
- Boyd R. J.
- Boyd R. J.
- Brandhorst K.
- Brandhorst K.
- Brandl M.
- Brovaretsâ O. O.
- Brovaretsâ O. O.
- Bruce R. St L.
- Buckingham A. D.
- Calhorda M. J.
- Carpenter M. A.
- CerĂłn-Carrasco J. P.
- Chaney J. D.
- Cheng Y.-K.
- Chung S.
- Ciao X.
- Cleland W. W.
- Cubero E.
- Cubero E.
- Danilov V. I.
- Danilov V. I.
- Deng J.
- Desiraju G. R.
- Desiraju G. R.
- Desiraju G. R.
- Desiraju G. R.
- Desiraju G. R.
- Dong H.
- Donohue J.
- Egli M.
- Escude C.
- Espinosa E.
- Espinosa E.
- Fonseca Guerra C.
- Frank-Kamenetskii M. D.
- Frisch M. J.
- Frisch M. J.
- Frisch M. J.
- Gerlt J. A.
- Ghosal G.
- Gilbert D. E.
- Gilli P.
- Grabowski S. J.
- Grabowski S. J.
- Grunenberg J.
- Gu Y.
- Gutowski M.
- Hamdani H. Y.
- Haschemeyer A. E. V.
- Hermansson K.
- Hill-Perkins M.
- Hobza P.
- Hoogsteen K.
- Hunter W. N.
- Jeffrey G. A.
- Jeffrey G. A.
- Jeffrey G. A.
- Johnson R. E.
- Jones C. R.
- Joseph J.
- Jovin T. M.
- Khuu P.
- Knop O.
- Knop O.
- Koch U.
- Krishnan R.
- Kryachko E. S.
- Kryachko E. S.
- Lee C.
- Lee J. C.
- Lehn J.-M.
- Lemieux A.
- Leonard G. A.
- Leontis N. B.
- Leontis N. B.
- Leontis N. B.
- Lescoute A.
- Lindahl T.
- Liu K.
- Löwdin P.-O.
- Löwdin P.-O.
- Mandel-Gutfreund Y.
- Mata I.
- Matsuura H.
- Matta C. F.
- Mizuno K.
- Nagaswamy U.
- Nair D. T.
- Nair D. T.
- Neidle S.
- Novoa J. J.
- Olson W. K.
- Otto C.
- Pan B.
- Parr R. G.
- Parthasarathi R.
- Parvathy V. R.
- Patel D. J.
- Patikoglou G. A.
- Pelmenschikov A.
- Perrin C. L.
- Ponomareva A. G.
- Pranav R. S.
- Quigley G. J.
- Quinn J. R.
- Rice P. A.
- Saenger W.
- Scheiner S.
- Scheiner S.
- Schuster P.
- Seaman F. C.
- Shishkin O. V.
- Shishkin O. V.
- Sordo J. A.
- Sordo J. A.
- Starikov E. B.
- Steiner T.
- Steiner T.
- Steiner T.
- Steiner T.
- Sutor D. J.
- Sutor D. J.
- SĂŒhnel J.
- Taylor R.
- Tchurikov N. A.
- Tchurikov N. A.
- Tchurikov N. A.
- Tirado-Rives J.
- Topal M. D.
- Voet D.
- Wahl M. C.
- Wahl M. C.
- Warshel A.
- Watson J. D.
- Watson J. D.
- Wöhnert J.
- Xin Y.
- Zagryadskaya E. I.
- Zhou P.-P.
- Zundel G.
- Publication venue
- 'Informa UK Limited'
- Publication date
- Field of study
No full text
