Sequencing of Proteins Extracted from Stones

Proteins from urinary tract and gallbladder stones were extracted and characterized to determine the composition of the matrix and possibly unravel the role of the organic phase in stone formation. Proteins from crushed stones were extracted by electrodialysis and concentrated in the Amicon centricon cartridge or by lyophilization after dialysis against distilled water. Aliquots were first analyzed by isoelectric focusing in gel and if suitable subjected to two-dimensional (2D) electrophoresis. The most promising spots were harvested and the N-terminal amino acids sequenced, thus providing maximum information with minimum expenditure of material. The 2D separations and amino acid sequences of several protein extracts demonstrated similarities and differences in composition and achieved the identification or demonstration of previously and recently detected polypeptides

The Matrix of Urinary Tract Stones: Protein Composition, Antigenicity, and Ultrastructure

We have extracted proteins from urinary tract stones by electrodialysis and have developed antisera to the core and the shell of a renal stone. The protein composition varies between stones but is identical in the core and the shell of the same stone. One stone antigen is present in the urine of normal individuals and stone formers, as well as in cholesterol gallstone extracts. Electron microscopy of the core of a urate-calcium oxalate stone before and after demineralization reveals a fibrillar structure associated with mineral deposits, as well as aggregates of crystals

A Cationic Protein from a Urate-Calcium Oxalate Stone: Isolation and Purification of a Shared Protein

A protein extracted from a urate - calcium oxalate stone by electrodialysis is also excreted in the urine which served as the source material for its purification by FPLC after separation on an ACA44 column. It has an amino acid composition appropriate for a cationic protein. One peptide obtained by cyanogen bromide cleavage has significant (approximately 60%) homology with CD59 protein (protectin). Both proteins have wide distribution, the unknown having been found in bile, cholesterol gallstones, and the wall of the aorta. However, the two proteins appear to be immunologically different

Urinary Stone Proteins: An Update

The discovery of an organic component in kidney stones dates back to 1684. More than 150 years elapsed before the incrustation of this organic component, which is now called the matrix, was proposed as the mechanism of stone formation. The composition of the matrix remained largely unknown until the development of electron microscopy and the advances in biochemistry combined in the 1950\u27s to usher in the modern era of renal stone matrix investigation. Composed mainly of selectively incorporated proteins generally characterized by high glutamic and aspartic acid content and the frequent occurrence of y-carboxyglutamic acid, the matrix dis-plays a variable and complex composition and shares a few proteins in many stones. The embryonic stone may . first appear in the renal tubules where it can acquire the blood and cell membrane proteins recently found by analysis of stone protein extracts. The combination of supersaturation, an appropriate environment, the avail-ability of calcium binding proteins which may be abnormal, and the incorporation of proteins extracted from leukocytes and cell wall membranes may induce stone formation

Extended High-Ionization Nuclear Emission-Line Region in the Seyfert Galaxy NGC 4051

We present an optical spectroscopic analysis of the well-known Seyfert galaxy NGC 4051. The high-ionization nuclear emission-line region (HINER) traced by [Fe X]6374 is found to be spatially extended to a radius of 3a rcseconds (150 pc) west and southwest from the nucleus; NGC 4051 is the third example which has an extended HINER. The nuclear spectrum shows that the flux of [Fe X]6374 is stronger than that of [Fe VII] 6087 in our observation. This property cannot be interpreted in terms of a simple one-zone photoionization model. In order to understand what happens in the nuclear region in NGC 4051, we investigate the physical condition of the nuclear emission-line region in detail using new photoionization models in which the following three emission-line components are taken into account; (1) optically thick, ionization-bounded clouds; (2) optically thin, matter-bounded clouds; and (3) a contamination component which emits H$\alpha$ and H$\beta$ lines. Here the observed extended HINER is considered to be associated with the low-density, matter-bounded clouds. Candidates of the contamination component are either the broad-line region (BLR) or nuclear star forming regions or both. The complexity of the excitation condition found in NGC 4051 can be consistently understood if we take account of these contamination components.Comment: 16 pages, including figures. To Appear in the Astronomical Journal February 2000 Issu

Ages and Abundances of Red Sequence Galaxies as a Function of LINER Emission Line Strength

Although the spectrum of a prototypical early-type galaxy is assumed to lack emission lines, a substantial fraction (likely as high as 30%) of nearby red sequence galaxy spectra contain emission lines with line ratios characteristic of low ionization nuclear emission-line regions (LINERs). We use spectra of ~6000 galaxies from the Sloan Digital Sky Survey (SDSS) in a narrow redshift slice (0.06 < z < 0.08) to compare the stellar populations of red sequence galaxies with and without LINER-like emission. The spectra are binned by internal velocity dispersion and by emission properties to produce high S/N stacked spectra. The recent stellar population models of R. Schiavon (2007) make it possible to measure ages, [Fe/H], and individual elemental abundance ratios [Mg/Fe], [C/Fe], [N/Fe], and [Ca/Fe] for each of the stacked spectra. We find that red sequence galaxies with strong LINER-like emission are systematically 2-3.5 Gyr (10-40%) younger than their emission-free counterparts at the same velocity dispersion. This suggests a connection between the mechanism powering the emission (whether AGN, post-AGB stars, shocks, or cooling flows) and more recent star formation in the galaxy. We find that mean stellar age and [Fe/H] increase with velocity dispersion for all galaxies. Elemental abundance [Mg/Fe] increases modestly with velocity dispersion in agreement with previous results, and [C/Fe] and [N/Fe] increase more strongly with velocity dispersion than does [Mg/Fe]. [Ca/Fe] appears to be roughly solar for all galaxies. At fixed velocity dispersion, galaxies with fainter r-band luminosities have lower [Fe/H] and older ages but similar abundance ratios compared to brighter galaxies.Comment: 25 pages, 17 figures, Accepted for publication in ApJ as of 16 July 2007; acceptance status updated, paper unchange

Physical Conditions in the Narrow-Line Region of M51

We have investigated the physical conditions in the narrow-line region (NLR) of M51 using long-slit spectra obtained with the Space Telescope Imaging Spectrograph (STIS) aboard the Hubble Space Telescope (HST) and 3.6 cm radio continuum observations obtained with the Very Large Array (VLA). Emission-line diagnostics were employed for nine NLR clouds, which extend 2.5" (102 pc) from the nucleus, to examine the electron density, temperature, and ionization state of the NLR gas. The emission-line ratios are consistent with those typically found in Seyfert nuclei and indicate that within the inner near-nuclear region (r ~< 1") the ionization decreases with increasing radius. Upper-limits to the [O III] electron temperature (T ~< 11,000 K) for the inner NLR clouds indicate that photoionization is the dominant ionization mechanism close to the nucleus. The emission-line fluxes for most of the NLR clouds can be reproduced reasonably well by simple photoionization models using a central power-law continuum source and supersolar nitrogen abundances. Shock+precursor models, however, provide a better fit to the observed fluxes of an NLR cloud ~2.5" south of the nucleus that is identified with the extra-nuclear cloud (XNC). The large [O III] electron temperature of this cloud (T = 24,000 K) further suggests the presence of shocks. This cloud is straddled by two radio knots and lies near the location where a weak radio jet, ~2.5" (102pc) in extent, connects the near-nuclear radio emission with a diffuse lobe structure spanning \~4" (163 pc). It is plausible that this cloud represents the location where the radio jet impinges on the disk ISM.Comment: 25 pages, 26 figures (9 color), 7 tables. Accepted for publication in the Astrophysical Journa