Differentiation and Temperature Adaptation of Pampus Echinogaster Based on Genome-Wide SNPs

Climate change and overfishing have led to the degradation of the quality and stock of Pampus echinogaster. Exploring the genetic structure and local adaptive evolutionary mechanisms of P. echinogaster is crucial for the management of this species. This population genomic study of nine geographical populations of P. echinogaster in China was conducted by specific-locus amplified fragment sequencing (SLAF-seq). A total of 935,215 SLAF tags were obtained, and the average sequencing depth of the SLAF tags was 20.80×. After filtering, a total of 46,187 high-consistency genome-wide single nucleotide polymorphisms (SNPs) were detected. Based on all SNPs, the population size of the nine P. echinogaster geographical populations was large. The Shantou population had the lowest genetic diversity, and the Tianjin population had the highest. Moreover, the population genetic structure based on all SNPs revealed significant gene exchange and no significant genetic differentiation among the nine P. echinogaster geographical populations, probably because of the population expansion after the last glacial period, the lack of balance between migration and genetic drift, and the long-distance diffusion of eggs and larvae. We suspect that variation of material metabolism, ion transfer, breeding, stress response, and inflammatory reactions-related genes were critical for adaptation to spatially heterogeneous temperature selection in natural P. echinogaster populations

Analysis of land-atmosphere interactions and their influence on the energy and water cycle over the Tibetan Plateau

The Tibetan Plateau (TP) has been the focus of numerous studies examining the energy and water cycle variations, but there is still a lack of long-term, quantitative precise assessments of evapotranspiration. This research first provided two sets of long-term comprehensive observational datasets, and an advanced monitoring technique to measure soil moisture, which can improve the estimation accuracy of evapotranspiration. Subsequently, using microwave data, the Surface Energy Balance System model and Machine Learning methods, it calculated a complete set of long-term evapotranspiration data. At the same time, based on reasonable assumptions, it also estimated the total evaporation from plateau lakes. These findings contribute significantly to the understanding of the relationship between the Asian monsoon, the TP’s physical characteristics, and its atmosphere, thereby improving predictions of water resource variability in the TP. The study’s innovative methodologies and synthesis of diverse data sources provide critical information for informed and sustainable water management strategies in the region.</p

Mangrovimonas spongiae sp. nov., a novel member of the genus Mangrovimonas isolated from marine sponge

A taxonomic study was carried out on strain HN-E26T, which was isolated from sponge collected from Yangpu Bay, Hainan, PR China. Cells of strain HN-E26T were Gram-stain-negative, motile by gliding, yellow-pigmented and rod-shaped. The strain could grow at 10–40 °C (optimum, 25 °C), at pH 6.0–9.0 (optimum, pH 7.0) and in 0.5–12 % (w/v) NaCl (optimum, 4–7 %). This isolate was positive for oxidase, catalase, and the hydrolysis of starch, xylan, aesculin and gelatin, but negative for indole production and the reduction of nitrate. Strain HN-E26T shared the highest 16S rRNA gene sequence similarity with Mangrovimonas yunxiaonensis LYYY01T (95.5 %), followed by Formosa spongicola A2T (94.4 %), Meridianimaribacter flavus NH57NT (94.3 %) and Winogradskyella exilis 022-2-26T (94.3 %). The phylogenetic tree based on 16S rRNA gene sequences revealed that strain HN-E26T formed a distinct phylogenetic lineage within the cluster comprising Mangrovimonas yunxiaonensis LYYY01T and ‘ Mangrovimonas xylaniphaga ’ ST2L12T. The dominant fatty acids were iso-C15 : 0 and iso-C15 : 1 G. The major polar lipids comprised phosphatidylethanolamine, three unidentified aminolipids and six unidentified lipids. The respiratory lipoquinone was identified as MK-6. The G+C content of the genomic DNA was 33.9 mol%. Based on the phenotypic and phylogenetic data, strain HN-E26T represents a novel species of the genus Mangrovimonas , for which the name Mangrovimonas spongiae sp. nov. is proposed, with the type strain HN-E26T (=MCCC 1K03326T=LMG 30458T).</jats:p