Validated Molecular Marker for Downy Mildew Disease Resistance Breeding of Sunflower: A Short Review

The oomycete pathogen Plasmopara halstedii responsible for sunflower downy mildew (DM), that is a significant and important disease that greatly affects the economy. As of now, there is no non-race-specific resistance for this disease and breeders are depended on race-specific resistance to control DM disease. On the other hand, using conventional breeding procedure introgression of the DM resistance genes is a long-term task due to the highly virulent and aggressive nature of the P. halstedii pathogen. Molecular markers that can be applied at the seedling stage, offers rapid response for selection with higher precision as well as a lower cost. There are currently 36 downy mildew resistance genes (R genes), designated as Pl (Pl1-Pl36, Plhra, and PlArg, in sunflowers, each with a unique linkage group (LGs). The availability of DM resistance genomic data of sunflower, related to Single Nucleotide Polymorphisms (SNP) based markers with mine allelic diversity maximize the opportunity of utilizing Marker assisted selection (MAS) techniques for downy mildew resistance breeding. This review highlights the available genetic marker and their utilization at MAS techniques for enhancing downy mildew disease resistant breeding program of sunflowers

Validated molecular marker for downy mildew disease resistance breeding of sunflower: A short review

The oomycete pathogen Plasmopara halstedii responsible for sunflower downy mildew (DM), that is a significant and important disease that greatly affects the economy. As of now, there is no non-race-specific resistance for this disease and breeders are depended on race-specific resistance to control DM disease. On the other hand, using conventional breeding procedure introgression of the DM resistance genes is a long-term task due to the highly virulent and aggressive nature of the P. halstedii pathogen. Molecular markers that can be applied at the seedling stage, offers rapid response for selection with higher precision as well as a lower cost. There are currently 36 downy mildew resistance genes (R genes), designated as Pl (Pl1-Pl36, Plhra, and PlArg, in sunflowers, each with a unique linkage group (LGs). The availability of DM resistance genomic data of sunflower, related to Single Nucleotide Polymorphisms (SNP) based markers with mine allelic diversity maximize the opportunity of utilizing Marker assisted selection (MAS) techniques for downy mildew resistance breeding. This review highlights the available genetic marker and their utilization at MAS techniques for enhancing downy mildew disease resistant breeding program of sunflowers

Experience in establishing a high-risk biocontainment facility in response to COVID-19 pandemic under resource constrain settings

The health care systems in resource limited countries are facing major challenges in dealing with Coronavirus disease (COVID-19). In Bangladesh, a steady increase in the number of COVID-19 cases since its first report on March 8, 2020, has led to an increased demand for COVID-19 detection facilities throughout the country. The detection of severe acute respiratory syndrome (SARS-CoV-2), the causative organism of COVID-19 and a highly infectious group 3(three) organism, requires a high biocontainment laboratory with a certain standard prerequisite infrastructure. This study describes the necessary steps for establishing and running a COVID-19 laboratory under resource constraint settings. Our experience indicates that, with collaborative efforts, funding, and technical support from locally available expertise, it is feasible to set up an optimally functional biocontainment facility with an acceptable quality performance despite several short comings. BSMMU J 2021; 14 (COVID -19 Supplement): 45-5

Population Enumeration and Household Utilization Survey Methods in the Enterics for Global Health (EFGH): Shigella Surveillance Study

Background: Accurate estimation of diarrhea incidence from facility-based surveillance requires estimating the population at risk and accounting for case patients who do not seek care. The Enterics for Global Health (EFGH) Shigella surveillance study will characterize population denominators and healthcare-seeking behavior proportions to calculate incidence rates of Shigella diarrhea in children aged 6–35 months across 7 sites in Africa, Asia, and Latin America. Methods: The Enterics for Global Health (EFGH) Shigella surveillance study will use a hybrid surveillance design, supplementing facility-based surveillance with population-based surveys to estimate population size and the proportion of children with diarrhea brought for care at EFGH health facilities. Continuous data collection over a 24 month period captures seasonality and ensures representative sampling of the population at risk during the period of facility-based enrollments. Study catchment areas are broken into randomized clusters, each sized to be feasibly enumerated by individual field teams. Conclusions: The methods presented herein aim to minimize the challenges associated with hybrid surveillance, such as poor parity between survey area coverage and facility coverage, population fluctuations, seasonal variability, and adjustments to care-seeking behavior

Data Management in Multicountry Consortium Studies: The Enterics For Global Health (EFGH) Shigella Surveillance Study Example

Background: Rigorous data management systems and planning are essential to successful research projects, especially for large, multicountry consortium studies involving partnerships across multiple institutions. Here we describe the development and implementation of data management systems and procedures for the Enterics For Global Health (EFGH) Shigella surveillance study—a 7-country diarrhea surveillance study that will conduct facility-based surveillance concurrent with population-based enumeration and a health care utilization survey to estimate the incidence of Shigella­-associated diarrhea in children 6 to 35 months old. Methods: The goals of EFGH data management are to utilize the knowledge and experience of consortium members to collect high-quality data and ensure equity in access and decision-making. During the planning phase before study initiation, a working group of representatives from each EFGH country site, the coordination team, and other partners met regularly to develop the data management systems for the study. Results: This resulted in the Data Management Plan, which included selecting REDCap and SurveyCTO as the primary database systems. Consequently, we laid out procedures for data processing and storage, study monitoring and reporting, data quality control and assurance activities, and data access. The data management system and associated real-time visualizations allow for rapid data cleaning activities and progress monitoring and will enable quicker time to analysis. Conclusions: Experiences from this study will contribute toward enriching the sparse landscape of data management methods publications and serve as a case study for future studies seeking to collect and manage data consistently and rigorously while maintaining equitable access to and control of data

SMALL AREA ESTIMATION OF NUTRITIONAL STATUS OF UNDER-FIVE CHILDREN IN SYLHET DIVISION: AN M-QUANTILE APPROACH

Under nutrition is one of the severe problems around the globe and finds its place in the global agenda. Sustainable Development Goals (SDGs) highlight the need for special attention to eradicate malnutrition. Bangladesh having high prevalence of malnutrition is committed to fulfill the targets of SDGs. Though Bangladesh achieved remarkable success in improving nutritional status of under-five children at national level, there have been regional variations. Government is planning to target need based resource allocation to small administrative levels. To do that real time, small area level estimates of nutrition will be required. Sylhet division was severely suffering from one or all form of malnutrition (BBS, 2014). This research tried to address these issues for which a primary sample of size 300 was collected from Dharampasha Upazila of Sunamgonj district of Sylhet division for in-depth analysis. M-Quantile estimation method was used to identify small area estimates at Upazila level of Sylhet division. The Upazilas exhibiting poorest nutritional status was identified in maps for comparison. Special care should be given to help these Upazilas to come out of the cycle of malnutrition in addition to the common national programmes. The results are efficient and may be adopted in the future, especially where we have doubted in the distributional assumption of the data

Organization and implementation of an oral cholera vaccination campaign in an endemic urban setting in Dhaka, Bangladesh

Bangladesh has historically been cholera endemic, with seasonal cholera outbreaks occurring each year. In collaboration with the government of Bangladesh, the Infectious Diseases Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b) initiated operational research to test strategies to reach the high-risk urban population with an affordable oral cholera vaccine (OCV) “ShancholTM” and examine its effectiveness in reducing diarrhea due to cholera. Here we report a sub-analysis focusing on the organization, implementation and effectiveness of different oral cholera vaccine delivery strategies in the endemic urban setting in Bangladesh. We described how the vaccination program was planned, prepared and implemented using different strategies to deliver oral cholera vaccine to a high-risk urban population in Dhaka, Bangladesh based on administrative data and observations made during the program. The objective of this study is to evaluate the organization, implementation and effectiveness of different oral cholera vaccine delivery strategies in the endemic urban setting in Bangladesh. OCV administration by trained local volunteers through outreach sites and mop-up activities yielded high coverage of 82% and 72% of 172,754 targeted individuals for the first and second dose respectively, using national Expanded Program on Immunization (EPI) campaign mechanisms without disrupting routine immunization activities. The cost of delivery was low. Safety and cold chain requirements were adequately managed. The adopted strategies were technically and programmatically feasible. Current evidence on implementation strategies in different settings together with available OCV stockpiles should encourage at-risk countries to use OCV along with other preventive and control measures