Comparative genomic analysis of two Chilean Renibacterium salmoninarum isolates and the type strain ATCC 33209T

Indexación: Scopus.Two previously characterized Chilean isolates (H-2 and DJ2R), obtained from cage-cultured Atlantic salmon with clinical signs of bacterial kidney disease in southern Chile, were used (Bethke et al. 2016, 2017). The bacteria were routinely cultured in KDM-2 agar for 15–20 days at 15°C. For sequencing, genomic DNA of the two isolates was extracted using the InstaGene Purification Matrix (Bio-Rad) according to manufacturer instructions. The DJ2R genome was sequenced using an Illumina MiSeq platform with 2 ⨯ 250 paired-end reads by the AUSTRAL-omics Institute, hosted by the Universidad Austral de Chile (Valdivia, Chile). Using the same technology and parameters, H-2 genomic DNA was sequenced by the Central Support Service for Experimental Research (SCSIE, Spanish acronym) at the University of Valencia (Valencia, Spain).This work was supported by funding of the Comisión Nacional de Investigación Científica y Tecnológica (CONICYT, Chile) [Grant Numbers FONDAP No. 15110027 and FONDECYT No. 1150695]. J.B. also acknowledges support received by CONICYT [Doctoral Scholarship No. 21140421].Renibacterium salmoninarum, a slow-growing facultative intracellular pathogen belonging to the high C+G content Actinobacteria phylum, is the causative agent of bacterial kidney disease, a progressive granulomatous infection affecting salmonids worldwide. This Gram-positive bacterium has existed in the Chilean salmonid industry for >30 years, but little or no information is available regarding the virulence mechanisms and genomic characteristics of Chilean isolates. In this study, the genomes of two Chilean isolates (H-2 and DJ2R)were sequenced, and a search was conducted for genes and proteins involved in virulence and pathogenicity, andwecompare with the type strain ATCC 33209T genome. The genome sizes of H-2 and DJ2R are 3,155,332 bp and 3,155,228 bp, respectively. They genomes presented six ribosomal RNA, 46 transcription RNA, and 25 noncodingRNA, and both had the same 56.27% G+C content described for the type strain ATCC 33209 T. A total of 3,522 and 3,527 coding sequences were found for H-2 and DJ2R, respectively. Meanwhile, the ATCC 33209T type strain had 3,519 coding sequences. The in silico genome analysis revealed a genes related to tricarboxylic acid cycle, glycolysis, iron transport and others metabolic pathway. Also, the data indicated that R salmoninarum may have a variety of possible virulence-factor and antibiotic-resistance strategies. Interestingly, many of genes had high identities with Mycobacterium species, a known pathogenic Actin obacteria bacterium. In summary, this study provides the first insights into and initial steps towards understanding the molecular basis of antibiotic resistance, virulence mechanisms and host/environment adaptation in twoChilean R. salmoninarum isolates that contain proteins of which were similar to those of Mycobacterium. Furthermore, important information is presented that could facilitate the development of preventive and treatment measures against R. salmoninarum in Chile and worldwide. © The Author(s) 2018.https://academic.oup.com/gbe/article/10/7/1816/504777

Effects of Nonmaternal Child Care on Inequality in Cognitive Skills

As a result of changing welfare policies, large numbers of children of poor, uneducated mothersare likely to receive care from others as their mothers enter the workforce. How will this change affect inequality in cognitive skills among young children? One view suggests that inequality will expand because children from economically advantaged families have access to better child care, and families with well-educated parents are more likely to reinforce the cognitive benefits of care. Another view argues that inequality will diminish because even though child care may be unequal, it may be less unequal than the home environments that are supplanted by nonmaternal care. A third view suggests that because the effects of care are inconsistent, there will be little overall change in inequality. Analysis of the children of mothers in the National Longitudinal Survey of Youth provides tentative evidence in support of the first view, that nonmaternal care tends to magnify inequality. Although ordinary least squares regressions reveal no effects of child care, fixed-effects models that control for differences between families indicate that children of high-income, well-educated mothers benefit from center-based care, but children of low-income, poorly educated mothers suffer a cognitive disadvantage from attending day care centers. Home-based care, however, is not associated with cognitive performance. Results from nonparametric analyses are consistent with the findings from fixed-effects models. The key results rely mainly on a relatively small sample of about 700 children in 300 families that sent their children to different types of care, and they do not pertain to families with only one child, so caution is warranted in generalizing the findings.

Techniques for QCD calculations by numerical integration

Calculations of observables in quantum chromodynamics are typically performed using a method that combines numerical integrations over the momenta of final state particles with analytical integrations over the momenta of virtual particles. I describe the most important steps of a method for performing all of the integrations numerically.Comment: 36 pages with 16 postscript figure

Intellectual property as complex innovation projects component

The materials presented the possibilities development of intellectual property complex innovation projects modern highly effective science-based problems of improving the use of wastes of different industries on a complex enterprise that can provide all its energy needs alone. Some features of the possibilities of solving evidence-based problems of development of mechanisms for identifying syner-gistic processes, their scientific justification improving the use of wastes of different industries on a complex enterprise. The problem of wastes utilization and recycling is present as complex synergetic processes research and analysis of energy- and resource saving process-es for treatment of polymer wastes of various origin. The research focused on the study of issues such as the development of models of waste-modifying polymer. The investigation are focused in researching such problems as selection of scientific based methods of wastes to be utilized or recycled; the development of appropriated process flow sheets and choice of modifications additives and equipment for polymers waste recycling. The choice of appropriate plants with selected energy resources is very important for projects realization