A q-Analog of the Hua Equations

A necessary condition is established for a function to be in the image of a quantum Poisson integral operator associated to the Shilov boundary of the quantum matrix ball. A quantum analogue of the Hua equations is introduced.Comment: 22 pages, LaTeX2

Function Theory on a q-Analog of Complex Hyperbolic Space

This work deals with function theory on quantum complex hyperbolic spaces. The principal notions are expounded. We obtain explicit formulas for invariant integrals on `finite' functions on a quantum hyperbolic space and on the associated quantum isotropic cone. Also we establish principal series of $U_q \mathfrak{su}_{n,m}$-modules related to this cone, and obtain the necessary conditions for those modules to be equivalent.Comment: 21 page

Low-energy vibrational density of states of plasticized poly(methyl methacrylate)

The low-energy vibrational density of states (VDOS)of hydrogenated or deuterated poly(methyl methacrylate)(PMMA)plasticized by dibutyl phtalate (DBP) is determined by inelastic neutron scattering.From experiment, it is equal to the sum of the ones of the PMMA and DBP components.However, a partition of the total low-energy VDOS among PMMA and DBP was observed.Contrary to Raman scattering, neutron scattering does not show enhancement of the boson peak due to plasticization.Comment: 9 pages, 2 figures (Workshop on Disordered Systems, Andalo

Soluble oligomerization provides a beneficial fitness effect on destabilizing mutations

Mutations create the genetic diversity on which selective pressures can act, yet also create structural instability in proteins. How, then, is it possible for organisms to ameliorate mutation-induced perturbations of protein stability while maintaining biological fitness and gaining a selective advantage? Here we used a new technique of site-specific chromosomal mutagenesis to introduce a selected set of mostly destabilizing mutations into folA - an essential chromosomal gene of E. coli encoding dihydrofolate reductase (DHFR) - to determine how changes in protein stability, activity and abundance affect fitness. In total, 27 E.coli strains carrying mutant DHFR were created. We found no significant correlation between protein stability and its catalytic activity nor between catalytic activity and fitness in a limited range of variation of catalytic activity observed in mutants. The stability of these mutants is strongly correlated with their intracellular abundance; suggesting that protein homeostatic machinery plays an active role in maintaining intracellular concentrations of proteins. Fitness also shows a significant correlation with intracellular abundance of soluble DHFR in cells growing at 30oC. At 42oC, on the other hand, the picture was mixed, yet remarkable: a few strains carrying mutant DHFR proteins aggregated rendering them nonviable, but, intriguingly, the majority exhibited fitness higher than wild type. We found that mutational destabilization of DHFR proteins in E. coli is counterbalanced at 42oC by their soluble oligomerization, thereby restoring structural stability and protecting against aggregation

A q-Analog of the Hua Equations

A necessary condition is established for a function to be in the image of a quantum Poisson integral operator associated to the Shilov boundary of the quantum matrix ball. A quantum analogue of the Hua equations is introduced

Degenerate principal series of quantum Harish-Chandra modules

In this paper we study a quantum analogue of a degenerate principal series of $U_q \mathfrak{su}_{n,n}$-modules ($0<q<1$) related to the Shilov boundary of the quantum $n \times n$-matrix unit ball. We give necessary and sufficient conditions for the modules to be simple and unitarizable and investigate their equivalence. These results are q-analogues of known classical results on reducibility and unitarizability of SU(n,n)-modules obtained by Johnson, Sahi, Zhang, Howe and Tan.Comment: 33 pages, 4 figure

A remark on the three approaches to 2D Quantum gravity

The one-matrix model is considered. The generating function of the correlation numbers is defined in such a way that this function coincide with the generating function of the Liouville gravity. Using the Kontsevich theorem we explain that this generating function is an analytic continuation of the generating function of the Topological gravity. We check the topological recursion relations for the correlation functions in the $p$-critical Matrix model.Comment: 11 pages. Title changed, presentation improve

Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles

The stability, activity, and solubility of a protein sequence are determined by a delicate balance of molecular interactions in a variety of conformational states. Even so, most computational protein design methods model sequences in the context of a single native conformation. Simulations that model the native state as an ensemble have been mostly neglected due to the lack of sufficiently powerful optimization algorithms for multistate design. Here, we have applied our multistate design algorithm to study the potential utility of various forms of input structural data for design. To facilitate a more thorough analysis, we developed new methods for the design and high-throughput stability determination of combinatorial mutation libraries based on protein design calculations. The application of these methods to the core design of a small model system produced many variants with improved thermodynamic stability and showed that multistate design methods can be readily applied to large structural ensembles. We found that exhaustive screening of our designed libraries helped to clarify several sources of simulation error that would have otherwise been difficult to ascertain. Interestingly, the lack of correlation between our simulated and experimentally measured stability values shows clearly that a design procedure need not reproduce experimental data exactly to achieve success. This surprising result suggests potentially fruitful directions for the improvement of computational protein design technology

Inelastic light, neutron, and X-ray scatterings related to the heterogeneous elasticity of glasses

The effects of plasticization of poly(methyl methacrylate) glass on the boson peaks observed by Raman and neutron scattering are compared. In plasticized glass the cohesion heterogeneities are responsible for the neutron boson peak and partially for the Raman one, which is enhanced by the composition heterogeneities. Because the composition heterogeneities have a size similar to that of the cohesion ones and form quasiperiodic clusters, as observed by small angle X-ray scattering, it is inferred that the cohesion heterogeneities in a normal glass form nearly periodic arrangements too. Such structure at the nanometric scale explains the linear dispersion of the vibrational frequency versus the transfer momentum observed by inelastic X-ray scattering.Comment: 9 pages, 2 figures, to be published in J. Non-Cryst. Solids (Proceedings of the 4th IDMRCS