Monitoring Oil Exploitation Infrastructure and Dirt Roads with Object-Based Image Analysis and Random Forest in the Eastern Mongolian Steppe

Information on the spatial distribution of human disturbance is important for assessing and monitoring land degradation. In the Eastern Mongolian Steppe Ecosystem, one of the major driving factors of human-induced land degradation is the expansion of road networks mainly due to intensifications of oil exploration and exploitation. So far, neither the extents of road networks nor the extent of surrounding grasslands affected by the oil industry are monitored which is generally labor consuming. This causes that no information on the changes in the area which is affected by those disturbance drivers is available. Consequently, the study aim is to provide a cost-effective methodology to classify infrastructure and oil exploitation areas from remotely sensed images using object-based classifications with Random Forest. By combining satellite data with different spatial and spectral resolutions (PlanetScope, RapidEye, and Landsat ETM+), the product delivers data since 2005. For the classification variables, segmentation, spectral characteristics, and indices were extracted from all above mentioned imagery and used as predictors. Results show that overall accuracies of land use maps ranged 73%–93% mainly depending on satellites’ spatial resolution. Since 2005, the area of grassland disturbed by dirt roads and oil exploitation infrastructure increased by 88% with its highest expansion by 47% in the period 2005–2010. Settlements and croplands remained relatively constant throughout the 13 years. Comparison of multiscale classification suggests that, although high spatial resolutions are clearly beneficial, all datasets were useful to delineate linear features such as roads. Consequently, the results of this study provide an effective evaluation for the potential of Random Forest for extracting relatively narrow linear features such as roads from multiscale satellite images and map products that are possible to use for detailed land degradation assessments

Hyperspectral Data Analysis in R: The hsdar Package

Hyperspectral remote sensing is a promising tool for a variety of applications including ecology, geology, analytical chemistry and medical research. This article presents the new hsdar package for R statistical software, which performs a variety of analysis steps taken during a typical hyperspectral remote sensing approach. The package introduces a new class for efficiently storing large hyperspectral data sets such as hyperspectral cubes within R. The package includes several important hyperspectral analysis tools such as continuum removal, normalized ratio indices and integrates two widely used radiation transfer models. In addition, the package provides methods to directly use the functionality of the caret package for machine learning tasks. Two case studies demonstrate the package's range of functionality: First, plant leaf chlorophyll content is estimated and second, cancer in the human larynx is detected from hyperspectral data

Analysis and Discussion of Atmospheric Precursor of European Heat Summers

The prediction of summers with notable droughts and heatwaves on the seasonal scale is challenging, especially in extratropical regions, since their development is not yet fully understood. Thus, monitoring and analysis of such summers are important tasks to close this knowledge gap. In a previous paper, the authors presented hints that extreme summers are connected with specific conditions during the winter-spring transition season. Here, these findings are further discussed and analysed in the context of the Earth’s circulation systems. No evidence for a connection between the North Atlantic Oscillation or the Arctic Oscillation during the winter-spring transition and extremely hot and dry summers is found. However, inspection of the geopotential at 850 hPa shows that a Greenland-North Sea-Dipole is connected with extreme summers in Central Europe. This motivated the introduction of the novel Greenland-North Sea-Dipole-Index, GNDI. However, using this index as predictor would lead to one false alarm and one missed event in the time series analysed (1958–2011). Hints are found that the disturbance of the “dipole-summer” connection is due to El Niño/Southern Oscillation (ENSO). To consider the ENSO effect, the novel Central European Drought Index (CEDI) has been developed, which is composed of the GNDI and the Bivariate ENSO Time Series Index. The CEDI enables a correct indication of all extremely hot and dry summers between 1958 and 2011 without any false alarm

Land Cover Change in the Andes of Southern Ecuador — Patterns and Drivers

In the megadiverse tropical mountain forest in the Andes of southern Ecuador, a global biodiversity hotspot, the use of fire to clear land for cattle ranching is leading to the invasion of an aggressive weed, the bracken fern, which is threatening diversity and the provisioning of ecosystem services. To find sustainable land use options adapted to the local situation, a profound knowledge of the long-term spatiotemporal patterns of land cover change and its drivers is necessary, but hitherto lacking. The complex topography and the high cloud frequency make the use of remote sensing in this area a challenge. To deal with these conditions, we pursued specific pre-processing steps before classifying five Landsat scenes from 1975 to 2001. Then, we quantified land cover changes and habitat fragmentation, and we investigated landscape changes in relation to key spatial elements (altitude, slope, and distance from roads). Good classification results were obtained with overall accuracies ranging from 94.5% to 98.5% and Kappa statistics between 0.75 and 0.98. Forest was strongly fragmented due to the rapid expansion of the arable frontier and the even more rapid invasion by bracken. Unexpectedly, more bracken-infested areas were converted to pastures than vice versa, a practice that could alleviate pressure on forests if promoted. Road proximity was the most important spatial element determining forest loss, while for bracken the altitudinal range conditioned the degree of invasion in deforested areas. The annual deforestation rate changed notably between periods: ~1.5% from 1975 to 1987, ~0.8% from 1987 to 2000, and finally a very high rate of ~7.5% between 2000 and 2001. We explained these inconstant rates through some specific interrelated local and national political and socioeconomic drivers, namely land use policies, credit and tenure incentives, demography, and in particular, a severe national economic and bank crisis

An exactly solvable quantum-lattice model with a tunable degree of nonlocality

An array of N subsequent Laguerre polynomials is interpreted as an eigenvector of a non-Hermitian tridiagonal Hamiltonian $H$ with real spectrum or, better said, of an exactly solvable N-site-lattice cryptohermitian Hamiltonian whose spectrum is known as equal to the set of zeros of the N-th Laguerre polynomial. The two key problems (viz., the one of the ambiguity and the one of the closed-form construction of all of the eligible inner products which make $H$ Hermitian in the respective {\em ad hoc} Hilbert spaces) are discussed. Then, for illustration, the first four simplest, $k-$parametric definitions of inner products with $k=0,k=1,k=2$ and $k=3$ are explicitly displayed. In mathematical terms these alternative inner products may be perceived as alternative Hermitian conjugations of the initial N-plet of Laguerre polynomials. In physical terms the parameter $k$ may be interpreted as a measure of the "smearing of the lattice coordinates" in the model.Comment: 35 p

Model parameterization to simulate and compare the PAR absorption potential of two competing plant species

Mountain pastures dominated by the pasture grass Setaria sphacelata in the Andes of southern Ecuador are heavily infested by southern bracken (Pteridium arachnoideum), a major problem for pasture management. Field observations suggest that bracken might outcompete the grass due to its competitive strength with regard to the absorption of photosynthetically active radiation (PAR). To understand the PAR absorption potential of both species, the aims of the current paper are to (1) parameterize a radiation scheme of a two-big-leaf model by deriving structural (LAI, leaf angle parameter) and optical (leaf albedo, transmittance) plant traits for average individuals from field surveys, (2) to initialize the properly parameterized radiation scheme with realistic global irradiation conditions of the Rio San Francisco Valley in the Andes of southern Ecuador, and (3) to compare the PAR absorption capabilities of both species under typical local weather conditions. Field data show that bracken reveals a slightly higher average leaf area index (LAI) and more horizontally oriented leaves in comparison to Setaria. Spectrometer measurements reveal that bracken and Setaria are characterized by a similar average leaf absorptance. Simulations with the average diurnal course of incoming solar radiation (1998–2005) and the mean leaf–sun geometry reveal that PAR absorption is fairly equal for both species. However, the comparison of typical clear and overcast days show that two parameters, (1) the relation of incoming diffuse and direct irradiance, and (2) the leaf–sun geometry play a major role for PAR absorption in the two-big-leaf approach: Under cloudy sky conditions (mainly diffuse irradiance), PAR absorption is slightly higher for Setaria while under clear sky conditions (mainly direct irradiance), the average bracken individual is characterized by a higher PAR absorption potential. (∼74 MJ m−2 year−1). The latter situation which occurs if the maximum daily irradiance exceeds 615 W m−2 is mainly due to the nearly orthogonal incidence of the direct solar beam onto the horizontally oriented frond area which implies a high amount of direct PAR absorption during the noon maximum of direct irradiance. Such situations of solar irradiance favoring a higher PAR absorptance of bracken occur in ∼36% of the observation period (1998–2005). By considering the annual course of PAR irradiance in the San Francisco Valley, the clear advantage of bracken on clear days (36% of all days) is completely compensated by the slight but more frequent advantage of Setaria under overcast conditions (64% of all days). This means that neither bracken nor Setaria show a distinct advantage in PAR absorption capability under the current climatic conditions of the study area

Estimating Net Photosynthesis of Biological Soil Crusts in the Atacama Using Hyperspectral Remote Sensing

Biological soil crusts (BSC) encompassing green algae, cyanobacteria, lichens, bryophytes, heterotrophic bacteria and microfungi are keystone species in arid environments because of their role in nitrogen- and carbon-fixation, weathering and soil stabilization, all depending on the photosynthesis of the BSC. Despite their importance, little is known about the BSCs of the Atacama Desert, although especially crustose chlorolichens account for a large proportion of biomass in the arid coastal zone, where photosynthesis is mainly limited due to low water availability. Here, we present the first hyperspectral reflectance data for the most wide-spread BSC species of the southern Atacama Desert. Combining laboratory and field measurements, we establish transfer functions that allow us to estimate net photosynthesis rates for the most common BSC species. We found that spectral differences among species are high, and differences between the background soil and the BSC at inactive stages are low. Additionally, we found that the water absorption feature at 1420 nm is a more robust indicator for photosynthetic activity than the chlorophyll absorption bands. Therefore, we conclude that common vegetation indices must be taken with care to analyze the photosynthesis of BSC with multispectral data

ERK1 as a therapeutic target for dendritic cell vaccination against high-grade gliomas

Glioma regression requires the recruitment of potent anti-tumor immune cells into the tumor microenvironment. Dendritic cells (DCs) play a role in immune responses to these tumors. The fact that DC vaccines do not effectively combat high-grade gliomas, however, suggests that DCs need to be genetically modified especially to promote their migration to tumor relevant sites. Previously, we identified extracellular signal-regulated kinase (ERK1) as a regulator of DC immunogenicity and brain autoimmunity. In the present study, we made use of modern magnetic resonance methods to study the role of ERK1 in regulating DC migration and tumor progression in a model of high-grade glioma. We found that ERK1-deficient mice are more resistant to the development of gliomas, and tumor growth in these mice is accompanied by a higher infiltration of leukocytes. ERK1-deficient DCs exhibit an increase in migration that is associated with sustained Cdc42 activation and increased expression of actin-associated cytoskeleton-organizing proteins. We also demonstrated that ERK1 deletion potentiates DC vaccination and provides a survival advantage in high-grade gliomas. Considering the therapeutic significance of these results, we propose ERK1-deleted DC vaccines as an additional means of eradicating resilient tumor cells and preventing tumor recurrence

Administration of Panobinostat Is Associated with Increased IL-17A mRNA in the Intestinal Epithelium of HIV-1 Patients

Intestinal CD4+ T cell depletion is rapid and profound during early HIV-1 infection.This leads to a compromised mucosal barrier that prompts chronic systemic inflammation.The preferential loss of intestinal T helper 17 (Th17) cells in HIV-1 disease is a driver of the damage within the mucosal barrier and of disease progression.Thus, understanding the effects of new therapeutic strategies in the intestines has high priority. Histone deacetylase (HDAC) inhibitors (e.g., panobinostat) are actively under investigation as potential latency reversing agents in HIV eradication studies. These drugs have broad effects that go beyond reactivating virus, including modulation of immune pathways. We examined colonic biopsies from ART suppressed HIV-1 infected individuals (clinicaltrials.gov: NCT01680094) for the effects of panobinostat on intestinal T cell activation and on inflammatory cytokine production. We compared biopsy samples that were collected before and during oral panobinostat treatment and observed that panobinostat had a clear biological impact in this anatomical compartment. Specifically, we observed a decrease in CD69+ intestinal lamina propria T cell frequency and increased IL-17A mRNA expression in the intestinal epithelium. These results suggest that panobinostat therapy may influence the restoration of mucosal barrier function in these patients