Phases of New Physics in the CMB

Fluctuations in the cosmic neutrino background are known to produce a phase shift in the acoustic peaks of the cosmic microwave background. It is through the sensitivity to this effect that the recent CMB data has provided a robust detection of free-streaming neutrinos. In this paper, we revisit the phase shift of the CMB anisotropy spectrum as a probe of new physics. The phase shift is particularly interesting because its physical origin is strongly constrained by the analytic properties of the Green's function of the gravitational potential. For adiabatic fluctuations, a phase shift requires modes that propagate faster than the speed of fluctuations in the photon-baryon plasma. This possibility is realized by free-streaming relativistic particles, such as neutrinos or other forms of dark radiation. Alternatively, a phase shift can arise from isocurvature fluctuations. We present simple models to illustrate each of these effects. We then provide observational constraints from the Planck temperature and polarization data on additional forms of radiation. We also forecast the capabilities of future CMB Stage IV experiments. Whenever possible, we give analytic interpretations of our results.Comment: 39 pages, 10 figures, 5 tables; v2: minor corrections, references added; v3: corrected Planck parameter constraints, conclusions unchange

A Family of GFP-like Proteins with Different Spectral Properties in Lancelet Branchiostoma Floridae

Background: Members of the green fluorescent protein (GFP) family share sequence similarity and the 11-stranded β-barrel fold. Fluorescence or bright coloration, observed in many members of this family, is enabled by the intrinsic properties of the polypeptide chain itself, without the requirement for cofactors. Amino acid sequence of fluorescent proteins can be altered by genetic engineering to produce variants with different spectral properties, suitable for direct visualization of molecular and cellular processes. Naturally occurring GFP-like proteins include fluorescent proteins from cnidarians of the Hydrozoa and Anthozoa classes, and from copepods of the Pontellidae family, as well as non-fluorescent proteins from Anthozoa. Recently, an mRNA encoding a fluorescent GFP-like protein AmphiGFP, related to GFP from Pontellidae, has been isolated from the lancelet Branchiostoma floridae, a cephalochordate (Deheyn et al., Biol Bull, 2007 213:95). Results: We report that the nearly-completely sequenced genome of Branchiostoma floridae encodes at least 12 GFP-like proteins. The evidence for expression of six of these genes can be found in the EST databases. Phylogenetic analysis suggests that a gene encoding a GFP-like protein was present in the common ancestor of Cnidaria and Bilateria. We synthesized and expressed two of the lancelet GFP-like proteins in mammalian cells and in bacteria. One protein, which we called LanFP1, exhibits bright green fluorescence in both systems. The other protein, LanFP2, is identical to AmphiGFP in amino acid sequence and is moderately fluorescent. Live imaging of the adult animals revealed bright green fluorescence at the anterior end and in the basal region of the oral cirri, as well as weaker green signals throughout the body of the animal. In addition, red fluorescence was observed in oral cirri, extending to the tips. Conclusion GFP-like proteins may have been present in the primitive Metazoa. Their evolutionary history includes losses in several metazoan lineages and expansion in cephalochordates that resulted in the largest repertoire of GFP-like proteins known thus far in a single organism. Lancelet expresses several of its GFP-like proteins, which appear to have distinct spectral properties and perhaps diverse functions. Reviewers: This article was reviewed by Shamil Sunyaev, Mikhail Matz (nominated by I. King Jordan) and L. Aravind

High collocation of sand lance and protected top predators: implications for conservation and management

© The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Silva, T. L., Wiley, D. N., Thompson, M. A., Hong, P., Kaufman, L., Suca, J. A., Llopiz, J. K., Baumann, H., & Fay, G. High collocation of sand lance and protected top predators: implications for conservation and management. Conservation Science and Practice, (2021): 3:e274, doi: 10.1111/csp2.274.Spatial relationships between predators and prey provide critical information for understanding and predicting climate‐induced shifts in ecosystem dynamics and mitigating human impacts. We used Stellwagen Bank National Marine Sanctuary as a case study to investigate spatial overlap among sand lance (Ammodytes dubius), a key forage fish species, and two protected predators: humpback whales (Megaptera novaeangliae) and great shearwaters (Ardenna gravis). We conducted 6 years (2013–2018) of standardized surveys and quantified spatial overlap using the global index of collocation. Results showed strong, consistent collocation among species across seasons and years, suggesting that humpback whales and great shearwater distributions are tightly linked to sand lance. We propose that identifying sand lance habitats may indicate areas where humpbacks and shearwaters aggregate and are particularly vulnerable to human activities. Understanding how sand lance influence predator distributions can inform species protection and sanctuary management under present and future scenarios.This work was supported by the Bureau of Ocean Energy Management [IA agreement M17PG0019], NOAA Stellwagen Bank National Marine Sanctuary, U.S. Geological Survey, the Volgenau Foundation, and the Mudge Foundation