Bridging between litterbags and whole-ecosystem experiments: a new approach for studying lake sediments

Nearshore sediments have a major influence over the functioning of aquatic ecosystems, but predicting their response to future environmental change has proven difficult. Previous manipulative experiments have faced challenges controlling environmental conditions, replicating sediment mixing dynamics, and extrapolating across spatial scales. Here we describe a new approach to manipulate lake sediments that overcomes previous concerns about reproducibility and environment controls, whilst also bridging the gap between smaller microcosm or litterbag experiments and whole-ecosystem manipulations. Our approach involves submerging moderate-sized (~15 L) artificial substrates that have been standardised to mimic natural sediments within the littoral zones of lakes. We show that this approach can accurately mirror the absolute dissolved organic carbon concentrations and pH of pore water, and to a lesser degree inorganic carbon concentrations, from natural lake sediments with similar organic matter profiles. On a relative basis, all measured variables had similar temporal dynamics between artificial and adjacent natural sediments. Late-summer zooplankton biomass also did not differ between natural and artificial sediments. By offering a more realistic way to manipulate freshwater sediments than previously possible, our approach can improve predictions of lake ecosystems in a changing world

Temperature-Induced Increase in Methane Release from Peat Bogs: A Mesocosm Experiment

Peat bogs are primarily situated at mid to high latitudes and future climatic change projections indicate that these areas may become increasingly wetter and warmer. Methane emissions from peat bogs are reduced by symbiotic methane oxidizing bacteria (methanotrophs). Higher temperatures and increasing water levels will enhance methane production, but also methane oxidation. To unravel the temperature effect on methane and carbon cycling, a set of mesocosm experiments were executed, where intact peat cores containing actively growing Sphagnum were incubated at 5, 10, 15, 20, and 25°C. After two months of incubation, methane flux measurements indicated that, at increasing temperatures, methanotrophs are not able to fully compensate for the increasing methane production by methanogens. Net methane fluxes showed a strong temperature-dependence, with higher methane fluxes at higher temperatures. After removal of Sphagnum, methane fluxes were higher, increasing with increasing temperature. This indicates that the methanotrophs associated with Sphagnum plants play an important role in limiting the net methane flux from peat. Methanotrophs appear to consume almost all methane transported through diffusion between 5 and 15°C. Still, even though methane consumption increased with increasing temperature, the higher fluxes from the methane producing microbes could not be balanced by methanotrophic activity. The efficiency of the Sphagnum-methanotroph consortium as a filter for methane escape thus decreases with increasing temperature. Whereas 98% of the produced methane is retained at 5°C, this drops to approximately 50% at 25°C. This implies that warming at the mid to high latitudes may be enhanced through increased methane release from peat bogs

Root exudate analogues accelerate CO 2 and CH 4 production in tropical peat

Root exudates represent a large and labile carbon input in tropical peatlands, but their contribution to carbon dioxide (CO2) and methane (CH4) production remains poorly understood. Changes in species composition and productivity of peatland plant communities in response to global change could alter both inputs of exudates and associated greenhouse gas emissions. We used manipulative laboratory incubations to assess the extent to which root exudate quantity and chemical composition drives greenhouse gas emissions from tropical peatlands. Peat was sampled from beneath canopy palms (Raphia taedigera) and broadleaved evergreen trees (Campnosperma panamensis) in an ombrotrophic wetland in Panama. Root exudate analogues comprising a mixture of sugars and organic acids were added in solution to peats derived from both species, with CO2 and CH4 measured over time. CO2 and CH4 production increased under most treatments, but the magnitude and duration of the response depended on the composition of the added labile carbon mixture rather than the quantity of carbon added or the botanical origin of the peat. Treatments containing organic acids increased soil pH and altered other soil properties including redox potential but did not affect the activities of extracellular hydrolytic enzymes. CO2 but not CH4 production was found to be linearly related to microbial activity and redox potential. Our findings demonstrate the importance of root exudate composition in regulating greenhouse gas fluxes and propose that in situ plant species changes, particularly those associated with land use change, may account for small scale spatial variation in CO2 and CH4 fluxes due to species specific root exudate compositions

The importance of plant genotype and contemporary evolution for terrestrial ecosystem processes

Plant genetic variation and evolutionary dynamics are predicted to impact ecosystem processes but these effects are poorly understood. Here we test the hypothesis that plant genotype and contemporary evolution influence the flux of energy and nutrients through soil, which then feedback to affect seedling performance in subsequent generations. We conducted a multiyear field evolution experiment using the native biennial plant Oenothera biennis. This experiment was coupled with experimental assays to address our hypothesis and quantify the relative importance of evolutionary and ecological factors on multiple ecosystem processes. Plant genotype, contemporary evolution, spatial variation, and herbivory affected ecosystem processes (e.g., leaf decay, soil respiration, seedling performance, N cycling), but their relative importance varied between specific ecosystem variables. Insect herbivory and evolution also contributed to a feedback that affected seedling biomass of O. biennis in the next generation. Our results show that heritable variation among plant genotypes can be an important factor affecting local ecosystem processes, and while effects of contemporary evolution were detectable and sometimes strong, they were often contingent on other ecological factors.This work was funded by a National Science Foundation grant (EAGER - 0950231) to A. Agrawal and M. Johnson, as well as an NSERC Discovery grant, a Canadian Foundation for Innovation LOF grant and Ontario Research Fund grant to M. Johnson

Think global, act local: The small-scale environment mainly influences microbial community development and function in lake sediment

The early stages of community development influence longer-term establishment of species, traits, and ultimately ecosystem function. How this process varies with small- and large-scale abiotic and biotic conditions is poorly studied in microbes. Here we tested how different spatial scales influenced the rate at which taxonomic and functional composition of microbial communities changed over time in lake sediments, and whether these changes occurred synchronously across different environments given the same initial communities. We manipulated the small-scale environment by creating sediments with different terrestrial organic matter (t-OM) quantity and quality, and placing these in two lakes differing in trophic status to vary the large-scale environment. We found that archaeal and bacterial communities, but not fungi, became taxonomically dissimilar over two months despite being derived from the same initial leaf material, primarily because of small-scale environmental conditions. Sediment t-OM quantity consistently explained changes in community composition both temporally within mesocosms and spatially between mesocosms in different lakes. Archaea, bacteria, and fungi also varied by up to 10-times in how quickly they changed, providing among the first evidence in the same study system that they respond differently over time to abiotic and biotic conditions. Finally, functional composition was influenced by both small- and large-scale environmental conditions, with genes involved in t-OM decomposition showing some of the largest changes in abundance after one year. Our study highlights that future changes to both sediments and lake waters can modify how sediment microbial communities develop with consequences for important ecosystem functions like carbon cycling.Support for this work came from NERC Standard Grant NE/L006561/1 and NBAF Grant NBAF968 to A.J.T

Climate-driven shifts in sediment chemistry enhance methane production in northern lakes

Freshwater ecosystems are a major source of methane (CH4), contributing 0.65 Pg (in CO2 equivalents) yr−1 towards global carbon emissions and offsetting ~25% of the terrestrial carbon sink. Most freshwater CH4 emissions come from littoral sediments, where large quantities of plant material are decomposed. Climate change is predicted to shift plant community composition, and thus change the quality of inputs into detrital food webs, with the potential to affect CH4 production. Here we find that variation in phenol availability from decomposing organic matter underlies large differences in CH4 production in lake sediments. Production is at least 400-times higher from sediments composed of macrophyte litter compared to terrestrial sources because of inhibition of methanogenesis by phenol leachates. Our results now suggest that earth system models and carbon budgets should consider the effects of plant communities on sediment chemistry and ultimately CH4 emissions at a global scale

Vegetation feedbacks of nutrient addition lead to a weaker carbon sink in an ombrotrophic bog

To study vegetation feedbacks of nutrient addition on carbon sequestration capacity, we investigated vegetation and ecosystem CO2 exchange at Mer Bleue Bog, Canada in plots that had been fertilized with nitrogen (N) or with N plus phosphorus (P) and potassium (K) for 7-12 years. Gross photosynthesis, ecosystem respiration, and net CO2 exchange were measured weekly during May-September 2011 using climate-controlled chambers. A substrate-induced respiration technique was used to determine the functional ability of the microbial community. The highest N and NPK additions were associated with 40% less net CO2 uptake than the control. In the NPK additions, a diminished C sink potential was due to a 20-30% increase in ecosystem respiration, while gross photosynthesis rates did not change as great