A new lab facility for measuring bidirectional reflectance/emittance distribution functions of soils and canopies

Recently, a laboratory measurement facility has been realized for assessing the anisotropic reflectance and emittance behaviour of soils, leaves and small canopies under controlled illumination conditions. The facility consists of an ASD FieldSpec 3 spectroradiometer covering the spectral range from 350 – 2500 nm at 1 nm spectral sampling interval. The spectroradiometer is deployed using a fiber optic cable with either a 1°, 8° or 25° instantaneous field of view (IFOV). These measurements can be used to assess the plant pigment (chlorophyll, xanthophyll, etc.) and non-pigment system (water, cellulose, lignin, nitrogen, etc.). The thermal emittance is measured using a NEC TH9100 Infrared Thermal Imager. It operates in a single band covering the spectral range from 8 – 14 mm with a resolution of 0.02 K. Images are 320 (H) by 240 (V) pixels with an IFOV of 1.2 mrad. A 1000 W Quartz Tungsten Halogen (QTH) lamp is used as illumination source, approximating the radiance distribution of the sun. This one is put at a fixed position during a measurement session. Multi-angular measurements are achieved by using a robotic positioning system allowing to perform either reflectance or emittance measurements over almost a complete hemisphere. The hemisphere can be sampled continuously between 0° and 80° from nadir and up to a few degrees from the hot-spot configuration (depending on the IFOV of the measurement device) for a backscattering target. Measurement distance to targets can be varied between 0.25 and 1 m, although with a distance of more than 0.6 m it is not possible to cover the full hemisphere. The goal is to infer the BRDF (bidirectional reflectance distribution function) and BTDF (bidirectional thermal distribution function) from these multi-angular measurements for various surface types (like soils, agricultural crops, small tree canopies and artificial objects) and surface roughness. The steering of the robotic arm and the reading of the spectroradiometer and the thermal camera are all fully automated

A new setup to measure bidirectional reflectance distribution functions

The Plant Facility, a new laboratory goniometer system, built by the Wageningen University has been tested in order to take bidirectional reflectance distribution function (BRDF) measurements. An ASD FieldSpec 3 spectroradiometer mounted on an industrial robot arm is able to measure small targets over the full hemispherical dome. Due to the fast acquisition time it is a promising setup for BRDF measurements of natural targets. In this paper, the preliminary results of BRDF measurements of freshly grown watercress and lawn grass are presented. The results show that both watercress and lawn grass show anisotropic behavior and that LAI plays an important role

Population-level consequences of complementary sex determination in a solitary parasitoid

BACKGROUND: Sex determination mechanisms are known to be evolutionarily labile but the factors driving transitions in sex determination mechanisms are poorly understood. All insects of the Hymenoptera are haplodiploid, with males normally developing from unfertilized haploid eggs. Under complementary sex determination (CSD), diploid males can be produced from fertilized eggs that are homozygous at the sex locus. Diploid males have near-zero fitness and thus represent a genetic load, which is especially severe under inbreeding. Here, we study mating structure and sex determination in the parasitoid Cotesia vestalis to investigate what may have driven the evolution of two complementary sex determination loci in this species.RESULTS: We genotyped Cotesia vestalis females collected from eight fields in four townships in Western Taiwan. 98 SNP markers were developed by aligning Illumina sequence reads of pooled DNA of eight different females against a de novo assembled genome of C. vestalis. This proved to be an efficient method for this non-model species and provides a resource for future use in related species. We found significant genetic differentiation within the sampled population but variation could not be attributed to sampling locations by AMOVA. Non-random mating was detected, with 8.1% of matings between siblings. Diploid males, detected by flow cytometry, were produced at a rate of 1.4% among diploids.CONCLUSIONS: We think that the low rate of diploid male production is best explained by a CSD system with two independent sex loci, supporting laboratory findings on the same species. Fitness costs of diploid males in C. vestalis are high because diploid males can mate with females and produce infertile triploid offspring. This severe fitness cost of diploid males combined with non-random mating may have resulted in evolution from single locus CSD to CSD with two independent loci.</p

New perspectives on the ecology of tree structure and tree communities through terrestrial laser scanning

Terrestrial laser scanning (TLS) opens up the possibility of describing the three-dimensional structures of trees in natural environments with unprecedented detail and accuracy. It is already being extensively applied to describe how ecosystem biomass and structure vary between sites, but can also facilitate major advances in developing and testing mechanistic theories of tree form and forest structure, thereby enabling us to understand why trees and forests have the biomass and three-dimensional structure they do. Here we focus on the ecological challenges and benefits of understanding tree form, and highlight some advances related to capturing and describing tree shape that are becoming possible with the advent of TLS. We present examples of ongoing work that applies, or could potentially apply, new TLS measurements to better understand the constraints on optimization of tree form. Theories of resource distribution networks, such as metabolic scaling theory, can be tested and further refined. TLS can also provide new approaches to the scaling of woody surface area and crown area, and thereby better quantify the metabolism of trees. Finally, we demonstrate how we can develop a more mechanistic understanding of the effects of avoidance of wind risk on tree form and maximum size. Over the next few years, TLS promises to deliver both major empirical and conceptual advances in the quantitative understanding of trees and tree-dominated ecosystems, leading to advances in understanding the ecology of why trees and ecosystems look and grow the way they do

Relationships between declining summer sea ice, increasing temperatures and changing vegetation in the Siberian Arctic tundra from MODIS time series (2000–11)

The concern about Arctic greening has grown recently as the phenomenon is thought to have significant influence on global climate via atmospheric carbon emissions. Earlier work on Arctic vegetation highlighted the role of summer sea ice decline in the enhanced warming and greening phenomena observed in the region, but did not contain enough details for spatially characterizing the interactions between sea ice, temperature and vegetation photosynthetic absorption. By using 1 km resolution data from the Moderate Resolution Imaging Spectrometer (MODIS) as a primary data source, this study presents detailed maps of vegetation and temperature trends for the Siberian Arctic region, using the time integrated normalized difference vegetation index (TI-NDVI) and summer warmth index (SWI) calculated for the period 2000-11 to represent vegetation greenness and temperature respectively. Spatio-temporal relationships between the two indices and summer sea ice conditions were investigated with transects at eight locations using sea ice concentration data from the Special Sensor Microwave/Imager (SSM/I). In addition, the derived vegetation and temperature trends were compared among major Arctic vegetation types and bioclimate subzones. The fine resolution trend map produced confirms the overall greening (+1% yr(-1)) and warming (+0.27% yr(-1)) of the region, reported in previous studies, but also reveals browning areas. The causes of such local decreases in vegetation, while surrounding areas are experiencing the opposite reaction to changing conditions, are still unclear. Overall correlations between sea ice concentration and SWI as well as TI-NDVI decreased in strength with increasing distance from the coast, with a particularly pronounced pattern in the case of SWI. SWI appears to be driving TI-NDVI in many cases, but not systematically, highlighting the presence of limiting factors other than temperature for plant growth in the region. Further unravelling those limiting factors constitutes a priority in future research. This study demonstrates the use of medium resolution remotely sensed data for studying the complexity of spatio-temporal vegetation dynamics in the Arctic