iGVPT2 : an interface to computational chemistry packages for anharmonic corrections to vibrational frequencies

iGVPT2 is a program for computing anharmonic corrections to vibration frequencies, based on force field expansion of the potential energy surface in normal mode coordinates. It includes second order vibrational perturbation theory (VPT2) algorithm and its derived methods (VPT2+K, DCPT2, HDCPT2). iGVPT2 is interfaced with several computation chemistry packages to compute the potential energies and dipoles derivatives. The second, third and quartic derivatives can be computed at the same level of theory but they can be also computed using different methods via one or two computational packages. iGPVT2 includes also a very fast hybrid QM//MM approach for biomolecules. It is provided free-of-charge for non-commercial research (see \url{https://sites.google.com/site/allouchear/igvpt2})

Rapid IRMPD analysis for glycomics

Infrared vibrational spectroscopy in the gas phase has emerged as a powerful tool to determine complex molecular structures with Angstrom accuracy. Among the different approaches IRMPD (InfraRed Multiple Photon Dissociation), which requires the use of an intense pulsed tunable laser in the IR domain, has been broadly applied to the study of complex (bio)molecules. Recently, it also emerged as a highly relevant approach for analytical purposes especially in the field of glycomics in which structural analysis is still a tremendous challenge. This opens the perspective to develop new analytical tools allowing for the determination of molecular structures with atomic precision, and to address advanced questions in the field. However, IRMPD experiments require either non commercial equipments and long acquisition time which limits the data output. Here we show that it is possible to improve the IRMPD performances by optimizing the combination between a LTQ XL mass spectrometer and a high repetition tunable laser Firefly. Two orders of magnitude are gained with this approach compared to usual experiments ultimately leading to a completely resolved spectrum acquired in less than one minute. These results open the way to many new applications in glycomics with the possibility to include IRMPD in complex analytical workflows

O -Acetylated sugars in the gas phase: stability, migration, positional isomers and conformation

O-acetylations are functional modifications which can be found on different hydroxyl groups of glycans and which contribute to the fine tuning of their biological activity. Localizing the acetyl modifications is notoriously challenging in glycoanalysis, in particular because of their mobility: loss or migration of the acetyl group may occur through the analytical workflow. Whereas migration conditions in the condensed phase have been rationalized, little is known about the suitability of Mass Spectrometry to retain and resolve the structure of O-acetylated glycan isomers. Here we use the resolving power of infrared ion spectroscopy in combination with ab initio calculation to assess the structure of O-acetylated monosaccharide ions in the gaseous environment of a mass analyzer. N-acetyl glucosamines were synthetized with an O-acetyl group in positions 3 or 6, respectively. The protonated ions produced by electrospray ionization were observed by mass spectrometry and their vibrational fingerprints were recorded in the 3 $μ$m range by IRMPD spectroscopy (InfraRed Multiple Photon Dissociation). Experimentally, the isomers show distinctive IR fingerprints. Additionally, ab initio calculations confirm the position of the O-acetylation and resolve their gas phase conformation. These findings demonstrate that the position of O-acetyl groups is retained through the transfer from solution to the gas phase, and can be identified by IRMPD spectroscopy

An energy approach describes spine equilibrium in adolescent idiopathic scoliosis

The adolescent idiopathic scoliosis (AIS) is a 3D deformity of the spine whose origin is unknown and clinical evolution unpredictable. In this work, a mixed theoretical and numerical approach based on energetic considerations is proposed to study the global spine deformations. The introduced mechanical model aims at overcoming the limitations of computational cost and high variability in physical parameters. The model is constituted of rigid vertebral bodies associated with 3D effective stiffness tensors. The spine equilibrium is found using minimization methods of the mechanical total energy which circumvents forces and loading calculation. The values of the model parameters exhibited in the stiffness tensor are retrieved using a combination of clinical images post-processing and inverse algorithms implementation. Energy distribution patterns can then be evaluated at the global spine scale to investigate given time patient-specific features. To verify the reliability of the numerical methods, a simplified model of spine was implemented. The methodology was then applied to a clinical case of AIS (13-year-old girl, Lenke 1A). Comparisons of the numerical spine geometry with clinical data equilibria showed numerical calculations were performed with great accuracy. The patient follow-up allowed us to highlight the energetic role of the apical and junctional zones of the deformed spine, the repercussion of sagittal bending in sacro-illiac junctions and the significant role of torsion with scoliosis aggravation. Tangible comparisons of output measures with clinical pathology knowledge provided a reliable basis for further use of those numerical developments in AIS classification, scoliosis evolution prediction and potentially surgical planning

Utilization of mechanical power and associations with clinical outcomes in brain injured patients: a secondary analysis of the extubation strategies in neuro-intensive care unit patients and associations with outcome (ENIO) trial

Background: There is insufficient evidence to guide ventilatory targets in acute brain injury (ABI). Recent studies have shown associations between mechanical power (MP) and mortality in critical care populations. We aimed to describe MP in ventilated patients with ABI, and evaluate associations between MP and clinical outcomes. Methods: In this preplanned, secondary analysis of a prospective, multi-center, observational cohort study (ENIO, NCT03400904), we included adult patients with ABI (Glasgow Coma Scale ≤ 12 before intubation) who required mechanical ventilation (MV) ≥ 24 h. Using multivariable log binomial regressions, we separately assessed associations between MP on hospital day (HD)1, HD3, HD7 and clinical outcomes: hospital mortality, need for reintubation, tracheostomy placement, and development of acute respiratory distress syndrome (ARDS). Results: We included 1217 patients (mean age 51.2 years [SD 18.1], 66% male, mean body mass index [BMI] 26.3 [SD 5.18]) hospitalized at 62 intensive care units in 18 countries. Hospital mortality was 11% (n = 139), 44% (n = 536) were extubated by HD7 of which 20% (107/536) required reintubation, 28% (n = 340) underwent tracheostomy placement, and 9% (n = 114) developed ARDS. The median MP on HD1, HD3, and HD7 was 11.9 J/min [IQR 9.2-15.1], 13 J/min [IQR 10-17], and 14 J/min [IQR 11-20], respectively. MP was overall higher in patients with ARDS, especially those with higher ARDS severity. After controlling for same-day pressure of arterial oxygen/fraction of inspired oxygen (P/F ratio), BMI, and neurological severity, MP at HD1, HD3, and HD7 was independently associated with hospital mortality, reintubation and tracheostomy placement. The adjusted relative risk (aRR) was greater at higher MP, and strongest for: mortality on HD1 (compared to the HD1 median MP 11.9 J/min, aRR at 17 J/min was 1.22, 95% CI 1.14-1.30) and HD3 (1.38, 95% CI 1.23-1.53), reintubation on HD1 (1.64; 95% CI 1.57-1.72), and tracheostomy on HD7 (1.53; 95%CI 1.18-1.99). MP was associated with the development of moderate-severe ARDS on HD1 (2.07; 95% CI 1.56-2.78) and HD3 (1.76; 95% CI 1.41-2.22). Conclusions: Exposure to high MP during the first week of MV is associated with poor clinical outcomes in ABI, independent of P/F ratio and neurological severity. Potential benefits of optimizing ventilator settings to limit MP warrant further investigation

Les différents modes d'exercice du chirurgien-dentiste en France

Les modes d'exercice du chirurgien-dentiste sont très variés. On note quand même une prédominance pour l'exercice libéral individuel suivi de près par l'exercice au sein d'une société civile de moyen. La majorité des praticiens sont satisfaits de la structure dans laquelle ils exercent et ne changeraient pas de mode d'exercice s'ils le pouvaient. Par contre, on note un réel problème démographique. De plus, tous les chirurgiens-dentistes n'exploitent pas leurs diplômes car en 2008, environ 5000 praticiens inscrits au tableau de l'ordre n'exerçaient pas. Il faut donc se pencher sérieusement sur la question: pourquoi n'exerçaient-ils pas? La réponse est peut-être due au fait qu'ils ne trouvaient pas de statuts leurs convenant. Ne devrait-on pas créer de nouveaux statuts afin que ces personnes là puissent exercer?CLERMONT FD-BCIU Odontol. (631132226) / SudocCLERMONT FD-BCIU-Santé (631132104) / SudocSudocFranceF

Index romain et littérature française au XIXe siècle (les motifs de censure des œuvres de fiction, à la lumière des archives de la Congrégation de l Index)

PARIS4-BU Serpente (751052129) / SudocSudocFranceF

Rapid IRMPD (InfraRed multiple photon dissociation) analysis for glycomics

Infrared ion spectroscopy has emerged as a powerful addition to mass spectrometry-based analytical tools.</jats:p

Fucose migration: where to ?

Fucose is a ubiquitous monosaccharide linked to the core of major classes of glycans and the identification of fucose location is one critical bottleneck in glycomics. This is due to the remarkable inclination of the fucosyl residue to migrate to neighboring throughout mass spectrometric analysis. Such molecular rearrangements first reported in the 90’s and called “internal residue loss” can be mistaken for diagnostic fragments and lead to false assignment of the position of fucose on the glycan core. While a variety of misleading fucosylated fragments has been observed for glycan standards, the exact molecular structure of fucosylated products after rearrangement remains elusive and their formation unpredictable. This constitutes a major obstacle to the sequencing of fucosylated glycans. Using Infrared ion spectrosopy, we resolve the molecular structure of fucosylated fragments of four Lewis and Blood Group H antigen trisaccharides. Our findings suggest that fucose migration, which was reported decades ago, results in fragment ions, which can be fully characterized. Additionally we report a new type of fucose migration, which does not feature any internal residue loss and therefore had not been previously detected by mass spectrometry: it consists of a local type of migration, where the fucose remains on the initial residue with a change of regiochemistry. Therefore, such glycan fragments previously regarded as diagnostic carry previously undetected molecular rearrangements. Infrared ion spectroscopy enables molecular characterization of glycan fragments and this knowledge is essential to the interpretation of glycomics data, as well as the understanding of the processes underlying Mass Spectrometry analysis

Fast and accurate hybrid QM//MM approach for computing anharmonic corrections to vibrational frequencies

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