Crystalline free energies of micelles of diblock copolymer solutions

We report a characterization of the relative stability and structural behavior of various micellar crystals of an athermal model of AB-diblock copolymers in solution. We adopt a previously devel- oped coarse-graining representation of the chains which maps each copolymer on a soft dumbbell. Thanks to this strong reduction of degrees of freedom, we are able to investigate large aggregated systems, and for a specific length ratio of the blocks f = MA/(MA + MB) = 0.6, to locate the order-disorder transition of the system of micelles. Above the transition, mechanical and thermal properties are found to depend on the number of particles per lattice site in the simulation box, and the application of a recent methodology for multiple occupancy crystals (B.M. Mladek et al., Phys. Rev. Lett. 99, 235702 (2007)) is necessary to correctly define the equilibrium state. Within this scheme we have performed free energy calculations at two reduced density {\rho}/{\rho}\ast = 4,5 and for several cubic structures as FCC,BCC,A15. At both densities, the BCC symmetry is found to correspond to the minimum of the unconstrained free energy, that is to the stable symmetry among the few considered, while the A15 structure is almost degenerate, indicating that the present sys- tem prefers to crystallize in less packed structures. At {\rho}/{\rho}\ast = 4 close to melting, the Lindemann ratio is fairly high (~ 0.29) and the concentration of vacancies is roughly 6%. At {\rho}/{\rho}\ast = 5 the mechanical stability of the stable BCC structure increases and the concentration of vacancies ac- cordingly decreases. The ratio of the corona layer thickness to the core radius is found to be in good agreement with experimental data for poly(styrene-b-isoprene)(22-12) in isoprene selective solvent which is also reported to crystallize in the BCC structure

Superconductivity-induced Phonon Renormalization on NaFe1−x_{1-x}Cox_{x}As

We report a study of the lattice dynamics in superconducting NaFeAs (Tc = 8 K) and doped NaFe0.97Co0.03As (Tc = 20 K) using Raman light scattering. Five of the six phonon modes expected from group theory are observed. In contrast with results obtained on iso-structural and iso-electronic LiFeAs, anomalous broadening of Eg(As) and A1g(Na) modes upon cooling is observed in both samples. In addition, in the Co-doped sample, a superconductivity-induced renormalization of the frequency and linewidth of the B1g(Fe) vibration is observed. This renormalization can not be understood within a single band and simple multi-band approaches. A theoretical model that includes the effects of SDW correlations along with sign-changing s-wave pairing state and interband scattering has been developed to explain the observed behavior of the B1g(Fe) mode.Comment: 10 pages; 6 figure

Interaction-induced localization of anomalously-diffracting nonlinear waves

We study experimentally the interactions between normal solitons and tilted beams in glass waveguide arrays. We find that as a tilted beam, traversing away from a normally propagating soliton, coincides with the self-defocusing regime of the array, it can be refocused and routed back into any of the intermediate sites due to the interaction, as a function of the initial phase difference. Numerically, distinct parameter regimes exhibiting this behavior of the interaction are identified.Comment: Physical Review Letters, in pres

Marginally Trapped Surfaces in the Nonsymmetric Gravitational Theory

We consider a simple, physical approach to the problem of marginally trapped surfaces in the Nonsymmetric Gravitational Theory (NGT). We apply this approach to a particular spherically symmetric, Wyman sector gravitational field, consisting of a pulse in the antisymmetric field variable. We demonstrate that marginally trapped surfaces do exist for this choice of initial data.Comment: REVTeX 3.0 with epsf macros and AMS symbols, 3 pages, 1 figur

Sashimi plots: Quantitative visualization of RNA sequencing read alignments

We introduce Sashimi plots, a quantitative multi-sample visualization of mRNA sequencing reads aligned to gene annotations. Sashimi plots are made using alignments (stored in the SAM/BAM format) and gene model annotations (in GFF format), which can be custom-made by the user or obtained from databases such as Ensembl or UCSC. We describe two implementations of Sashimi plots: (1) a stand-alone command line implementation aimed at making customizable publication quality figures, and (2) an implementation built into the Integrated Genome Viewer (IGV) browser, which enables rapid and dynamic creation of Sashimi plots for any genomic region of interest, suitable for exploratory analysis of alternatively spliced regions of the transcriptome. Isoform expression estimates outputted by the MISO program can be optionally plotted along with Sashimi plots. Sashimi plots can be used to quickly screen differentially spliced exons along genomic regions of interest and can be used in publication quality figures. The Sashimi plot software and documentation is available from: http://genes.mit.edu/burgelab/miso/docs/sashimi.htmlComment: 2 figure

Ultra-low-noise supercontinuum generation with a flat near-zero normal dispersion fiber

A pure silica photonic crystal fiber with a group velocity dispersion ($\beta_2$) of 4 ps$^2$/km at 1.55 $\mu$m and less than 7 ps$^2$/km from 1.32 $\mu$m to the zero dispersion wavelength (ZDW) 1.80 $\mu$m was designed and fabricated. The dispersion of the fiber was measured experimentally and found to agree with the fiber design, which also provides low loss below 1.83 $\mu$m due to eight outer rings with increased hole diameter. The fiber was pumped with a 1.55 $\mu$m, 125 fs laser and, at the maximum in-coupled peak power (P$_0$) of 9 kW, a 1.34$-$1.82 $\mu$m low-noise spectrum with a relative intensity noise below 2.2\% was measured. The numerical modeling agreed very well with the experiments and showed that P$_0$ could be increased to 26 kW before noise from solitons above the ZDW started to influence the spectrum by pushing high-noise dispersive waves through the spectrum

Anomalous interaction of nonlocal solitons in media with competing nonlinearities

We theoretically investigate properties of individual bright spatial solitons and their interaction in nonlocal media with competing focusing and defocusing nonlinearities. We consider the general case with both nonlinear responses characterized by different strengths and degrees of nonlocality. We employ a variational approach to analytically describe soliton properties. In particular, we prove analytically that the interplay of focusing and defocusing nonlocal nonlinearities leads to attraction or repulsion of solitons depending on their separation distance. We then study the propagation and interaction of solitons using numerical simulations of the full model of beam propagation. The numerical simulations fully confirm our analytical results

Unified nonequilibrium dynamical theory for exchange bias and training effects

We investigate the exchange bias and training effects in the FM/AF heterostructures using a unified Monte Carlo dynamical approach. This real dynamical method has been proved reliable and effective in simulating dynamical magnetization of nanoscale magnetic systems. The magnetization of the uncompensated AF layer is still open after the first field cycling is finished. Our simulated results show obvious shift of hysteresis loops (exchange bias) and cycling dependence of exchange bias (training effect) when the temperature is below 45 K. The exchange bias fields decrease with decreasing the cooling rate or increasing the temperature and the number of the field cycling. With the simulations, we show the exchange bias can be manipulated by controlling the cooling rate, the distributive width of the anisotropy energy, or the magnetic coupling constants. Essentially, these two effects can be explained on the basis of the microscopical coexistence of both reversible and irreversible moment reversals of the AF domains. Our simulated results are useful to really understand the magnetization dynamics of such magnetic heterostructures. This unified nonequilibrium dynamical method should be applicable to other exchange bias systems.Comment: Chin. Phys. B, in pres