The effect of thermal vibrations on extended x-ray absorption fine structure. I

The form of the Debye–Waller factor in EXAFS is discussed in detail, and an expression is obtained for this factor in a general three‐atom system of C_s symmetry. The normal modes which contribute to the Debye–Waller factors for each scattering path are dependent on the symmetry of the system. A series of model three‐atom systems with C_(2v) symmetry are studied and the Debye–Waller factors as a function of the bridging angle are discussed for each of these systems. The temperature dependence of the Debye‐Waller factor for each scattering path is also studied. In a system of C_(2v) symmetry, approximating the double and triple scattering Debye–Waller factors by the second shell single scattering factor is shown to be strictly valid only for a system close to linearity. The error due to this approximation is dependent upon the amplitude of the individual scattering paths and is shown to increase with temperature. When the single scattering contribution is unimportant, there is shown to exist a temperature where the above approximation is exact

Imaging spectroscopy with the atomic force microscope

Force curve imaging spectroscopy involves acquiring a force-distance curve at each pixel of an atomic force microscope image. Processing of the resulting data yields images of sample hardness and tip-sample adhesion. These images resemble Z modulation images and the sum of forward and reverse friction images, respectively, and like them exhibit a number of potentially misleading contrast mechanisms. In particular, XY tip motion has a pronounced effect on hardness images and the meniscus force on adhesion images

A high performance scanning force microscope head design

A stable and highly sensitive scanning force microscope head design is presented. The head provides an implementation of the optical lever detection method in which mechanical vibration noise has been minimized

Scanned-cantilever atomic force microscope

We have developed a 3.6 µm scan range atomic force microscope that scans the cantilever instead of the sample, while the optical-lever detection apparatus remains stationary. The design permits simpler, more adaptable sample mounting, and generally improves ease of use. Software workarounds alleviate the minor effects of spurious signal variations that arise as a result of scanning the cantilever. The performance of the microscope matches that of scanned-sample instruments

Evidence for the role of proteoglycans in cation-mediated gene transfer

We report evidence that gene complexes, consisting of polycations and plasmid DNA enter cells via binding to membrane-associated proteoglycans. Treatment of HeLa cells with sodium chlorate, a potent inhibitor of proteoglycan sulfation, reduced luciferase expression by 69%. Cellular treatment with heparinase and chondroitinase ABC inhibited expression by 78% and 20% with respect to control cells. Transfection was dramatically inhibited by heparin and heparan sulfate and to a smaller extent by chondroitan sulfate B. Transfection of mutant, proteoglycan deficient Chinese hamster ovary cells was 53 x lower than of wild-type cells. For each of these assays, the intracellular uptake of DNA at 37 degrees C and the binding of DNA to the cell membrane at 4 degrees C was impaired. Preliminary transfection experiments conducted in mutant and wild-type Chinese hamster ovary cells suggest that transfection by some cationic lipids is also proteoglycan dependent. The variable distribution of proteoglycans among tissues may explain why some cell types are more susceptible to transfection than others

Data analysis in extended x-ray-absorption fine structure: Determination of the background absorption and the threshold energy

Two approaches for the determination of the background absorption (μ_0) in the extended x-ray-absorption fine structure (EXAFS) are presented. Both methods, experimental and computational, take advantage of the damping of the EXAFS amplitude resulting from the convolution with Gaussian functions of different widths. In the experimental method two or more spectra are collected with the use of different spectrometer slit widths, resulting in spectra of different resolutions for the same sample. In the computational approach the convolution is accomplished via a convolution algorithm. The intersection points of the resulting spectra are used to generate μ_0. At the absorption edge, the spectra intersect at a unique point, which is shown to be a measure of the threshold energy, E_0. Illustration of the two methods for background removal is given for a copper-foil sample. The computational approach is superior to the experimental method of damping the EXAFS spectra to give μ_0

Tip–sample interactions: Extraction of single molecular pair potentials from force curves

This article describes a method for extracting the true tip–sample potential from an experimental force curve in atomic force microscopy. This potential is not the negative integral of the force curve. Rather, the potential is a more complicated function of the force curve and cantilever spring constant. If information about the shape of the tip is known, a decorrelation may be performed to extract molecular pair potentials from the total tip–sample potential. Applications and limitations of this method are discussed

Perturbed angular correlation study of a haptenic molecule

The angular correlation of the 173-247 keV gamma-ray cascade after the electron-capture decay of (111)In is strongly perturbed when the I-p-nitrophenylethylenediaminetetraacetate chelate of (111)In(3+) is added to a solution containing rabbit antibody to dinitrophenyl groups. The radioactive chelate can be displaced by the addition of dinitrophenyllysine or unlabeled chelate. The average association constant between the antibody and the labeled chelate has been estimated from perturbed angular correlation measurements; this value is compared to the results of equilibrium dialysis. These experiments provide good evidence that information concerning macromolecular behavior can be obtained from perturbed angular correlation experiments that use chemically specific labels

Observation of surface charge screening and Fermi level pinning on a synthetic, boron-doped diamond

Spectroscopic current-voltage (I-V) curves taken with a scanning tunneling microscope on a synthetic, boron-doped diamond single crystal indicate that the diamond, boiled in acid and baked to 500 °C in vacuum, does not exhibit ideal Schottky characteristics. These I-V curves taken in ultrahigh vacuum do not fit the traditional theory of thermionic emission; however, the deviation from ideal can be accounted for by charge screening at the diamond surface. At ambient pressure, the I-V curves have a sharp threshold voltage at 1.7 eV above the valence band edge indicating pinning of the Fermi energy. This measurement is in excellent agreement with the 1/3 band gap rule of Mead and Spitzer [Phys. Rev. 134, A713 (1964)]

Lateral forces during atomic force microscopy of graphite in air

Highly oriented pyrolytic graphite and boronated pyrolytic graphite were imaged in air by simultaneous normal and lateral force microscopy. A number of effects occurred when scanning over steps, including an increase in attractive forces from surface contamination which could be detrimental to the imaging of soft or weakly bonded samples. Contamination may also give rise to regions of high lateral force which do not seem to be associated with any topographic features. Finally, in atomic resolution images of graphite, atomic corrugation was clearer in the lateral cantilever deflection images than in the simultaneous topography and normal cantilever deflection images, demonstrating the high sensitivity of lateral force detection to topographic features