Sequence analysis of chromatin immunoprecipitation data for factors

Chromatin immunoprecipitation (ChIP) experiments allow the location of transcription factors to be determined across the genome. Subsequent analysis of the sequences of the identified regions allows binding to be localized at a higher resolution than can be achieved by current high-throughput experiments without sequence analysis and may provide important insight into the regulatory programs enacted by the protein of interest. In this chapter we review the tools, workflow, and common pitfalls of such analyses and recommend strategies for effective motif discovery from these data

Tests of fundamental symmetries and interactions - using nuclei and lasers

State of the art laser technology and modern spectroscopic methods allow to address issues of fundamental symmetries and fundamental interactions in atoms with high precision experiments. In particular the discrete symmetries Parity (P), Charge Conjugation (C), Time Reversal (T) as well as their combinations CP and CPT are in the center of interest at present. Actual projects are concerned with Parity Violation in atoms, Time Reversal Violation in beta-decays and searches for permanent Electric Dipole Moments (EDMs), and tests of CPT conservation in particle-antiparticle properties, in particular antiprotonic atoms