The Linkage Between Upper Circumpolar Deep Water (UCDW) and Phytoplankton Assemblages on the West Antarctic Peninsula Continental Shelf

Intrusion of Upper Circumpolar Deep Water (UCDW), which was derived from the Antarctic Circumpolar Current (ACC), onto the western Antarctic Peninsula (WAP) shelf region in January 1993 provided a reservoir of nutrient-rich, warmer water below 150 m that subsequently upwelled into the upper water column. Four sites, at which topographically-induced upwelling of UCDW occurred, were identified in a 50 km by 400 km band along the outer WAP continental shelf. One additional site at which wind-driven upwelling occurred was also identified. Diatom-dominated phytoplankton assemblages were always associated with a topographically-induced upwelling site. Such phytoplankton communities were not detected at any other shelf location, although diatoms were present everywhere in the 80,000 km(2) study area and UCDW covered about one-third the area below 150 m. Phytoplankton communities dominated by taxa other than diatoms were restricted to transition waters between the UCDW and shelf waters, the southerly flowing waters out of the Gerlache Strait, and/or the summertime glacial ice melt surface waters very near shore. We suggest that in the absence of episodic intrusion and upwelling of UCDW, the growth requirements for elevated silicate/nitrate ratios and/or other upwelled constituents (e.g. trace metals) are not sufficiently met for diatoms to achieve high abundance or community dominance. One consequence of this is that the ice-free regions of the outer WAP continental shelf will not experience predictable spring diatom blooms. Rather, this region will experience episodic diatom blooms that occur at variable intervals and during different seasonal conditions, if the physical structuring events are occurring. Preferential drawdown of silicate relative to nitrate was observed at each of the offshore upwelling sites and resulted in a reduction in the ambient silicate:nitrate ratio relative to the corresponding value for unmodified UCDW (1.5 versus 3.0 for UCDW). The magnitude of the nutrient drawdown in areas of topographically-induced upwelling suggested that diatom growth had been elevated in response to recent upwelling but that the resulting increased algal biomass was either dispersed by advective processes and/or consumed by the larger krill that were observed to be associated with each offshore upwelling site. Thus, diatom bloom conditions on the outer WAP shelf may not be recognized based on elevated biomass and/or rates of carbon fixation. It was likely that similar physical forcing of significant phytoplankton growth, especially diatoms, may occur but be undetected in regions where the southern boundary of the ACC nears the Antarctic continental shelf edge. Our analyses from the west Antarctic Peninsula demonstrate coupling of the structure of the physical environment with nutrient distributions and phytoplankton assemblages and through to the higher trophic levels, such as Antarctic krill. This environment-trophic coupling may also occur in other regions of the Antarctic, as suggested by correspondences between the distribution of Southern ACC boundary and regions of high concentrations of Antarctic krill. The many mechanisms underlying this coupling remain to be determined, but it was clear that the ecology and biology of the components of the marine food web of the Antarctic continental shelf cannot be studied in isolation from one another or in isolation from the physical environment

A multi-scale analysis of bull sperm methylome revealed both species peculiarities and conserved tissue-specific

peer-reviewedBackground: Spermatozoa have a remarkable epigenome in line with their degree of specialization, their unique nature and different requirements for successful fertilization. Accordingly, perturbations in the establishment of DNA methylation patterns during male germ cell differentiation have been associated with infertility in several species.Background: Spermatozoa have a remarkable epigenResults: The quantification of DNA methylation at CCGG sites using luminometric methylation assay (LUMA) highlighted the undermethylation of bull sperm compared to the sperm of rams, stallions, mice, goats and men. Total blood cells displayed a similarly high level of methylation in bulls and rams, suggesting that undermethylation of the bovine genome was specific to sperm. Annotation of CCGG sites in different species revealed no striking bias in the distribution of genome features targeted by LUMA that could explain undermethylation of bull sperm. To map DNA methylation at a genome-wide scale, bull sperm was compared with bovine liver, fibroblasts and monocytes using reduced representation bisulfite sequencing (RRBS) and immunoprecipitation of methylated DNA followed by microarray hybridization (MeDIP-chip). These two methods exhibited differences in terms of genome coverage, and consistently, two independent sets of sequences differentially methylated in sperm and somatic cells were identified for RRBS and MeDIP-chip. Remarkably, in the two sets most of the differentially methylated sequences were hypomethylated in sperm. In agreement with previous studies in other species, the sequences that were specifically hypomethylated in bull sperm targeted processes relevant to the germline differentiation program (piRNA metabolism, meiosis, spermatogenesis) and sperm functions (cell adhesion, fertilization), as well as satellites and rDNA repeats. Conclusions: These results highlight the undermethylation of bull spermatozoa when compared with both bovine somatic cells and the sperm of other mammals, and raise questions regarding the dynamics of DNA methylation in bovine male germline. Whether sperm undermethylation has potential interactions with structural variation in the cattle genome may deserve further attention. While bull semen is widely used in artificial insemination, the literature describing DNA methylation in bull spermatozoa is still scarce. The purpose of this study was therefore to characterize the bull sperm methylome relative to both bovine somatic cells and the sperm of other mammals through a multiscale analysis