NcPred for accurate nuclear protein prediction using n-mer statistics with various classification algorithms

Prediction of nuclear proteins is one of the major challenges in genome annotation. A method, NcPred is described, for predicting nuclear proteins with higher accuracy exploiting n-mer statistics with different classification algorithms namely Alternating Decision (AD) Tree, Best First (BF) Tree, Random Tree and Adaptive (Ada) Boost. On BaCello dataset [1], NcPred improves about 20% accuracy with Random Tree and about 10% sensitivity with Ada Boost for Animal proteins compared to existing techniques. It also increases the accuracy of Fungal protein prediction by 20% and recall by 4% with AD Tree. In case of Human protein, the accuracy is improved by about 25% and sensitivity about 10% with BF Tree. Performance analysis of NcPred clearly demonstrates its suitability over the contemporary in-silico nuclear protein classification research

End‑of‑life care for patients with advanced lung cancer and chronic obstructive pulmonary disease: Survey among Polish pulmonologists

Copyright by Medycyna Praktyczna, Kraków 2019 INTRODUCTION There is evidence that people with nonmalignant disease receive poorer end‑of‑life (EOL) care compared with people with cancer. OBJECTIVES The aim of the study was to assess the selected aspects of symptomatic treatment and communication between physicians and patients diagnosed with either advanced chronic obstructive pulmonary disease (COPD) or lung cancer. METHODS A questionnaire survey was conducted online among members of the Polish Respiratory Society. RESULTS Properly completed questionnaires were returned by 174 respondents (27.2% of those proved to be contacted by email). In COPD, 32% of respondents always or often used opioids in chronic breathlessness and 18.3% always or often referred patients to a palliative care (PC) specialist. Nearly 80% of the respondents claimed that bedside discussions on EOL issues with people with COPD are essential, although only 20% would always or often initiate them. In people with lung cancer, opioids were routinely used for relief of chronic breathlessness by 80% of physicians; 81.7% referred patients to a PC specialist. More than half of the respondents always or often discussed EOL issues only with the patient’s caregivers or relatives. Younger physicians, those at an earlier stage of their career, those caring for higher numbers of patients with lung cancer, and those who were better acquainted with Polish Respiratory Society recommendations for PC in chronic lung diseases seemed to provide better EOL care for COPD patients. CONCLUSIONS Patients with COPD, as compared with patients with lung cancer, were less frequently treated with opioids to relieve chronic breathlessness or referred for a PC consultation. Discussing the EOL issues with a patient was generally found challenging by physicians, and most often pursued with caregivers instead. The COPD recommendations on PC may prove helpful in providing better EOL care by pulmonologists

173. Does the correlation between chemotherapy-induced leukopenia with response in locally advanced breast cancer exist?

PurposeThe correlation between chemotherapy-induced toxicity and treatment outcome in cancer patients has not been thoroughly studied. Our aim was to evaluate whether leukopenia following primary chemotherapy may be predictive for response in patients with locally advanced breast cancer.Patients and MethodsThe records of 164 breast cancer patients administered primary chemotherapy between 1985 and 1995 were analysed. Most of the patients presented with locally advanced disease, however included were also patients with large operable tumours. Chemotherapy included one of the three combinations: CMF; modified Cooper regimen (CMFVP); 31 patients (19%), anthracycline-based regimens (FAC and FEC); 16 patients (10%) and 118 patients (71%).ResultsThe objective response rate in the entire group was 58%; 75% in patients who developed grade 2–3 leukopenia during induction chemotherapy, and 52% in those who had no or grade 1 leukopenia (p < 0.01, multivariate analysis). No other patient- or treatment-related factor including age, performance status, T stage, N stage, supraclavicular Iymph node involvement, inflammatory carcinoma or chemotherapy regimen correlated with response to chemotherapy. There was no correlation between treatment-induced leukopenia and overall survival.ConclusionsThese findings suggest a relationship between chemotherapy induced leukopenia and tumour response in patients with locally advanced breast cancer. The prognostic impact of leukopenia is negliglble

USING 18O, 2H ISOTOPES TO STUDY THE EFFECT OF FISH LAKE ON SURFACE WATER IN AL-AZEZEYIA, KUT GOVERNORATE, IRAQ

The interaction between surface water represented by Tigers River, Fish Lake, drainage and groundwater was examined in this study. Samples were collected from Al-Azezeyia city for stable isotope (2H and18O). Samplings of water were taken during January – September 2016 during the period of breeding fish. Two samples were taken from a fish lake, three samples from Tigers River and one sample from water drainage. The aim of this research is to assess the interaction of a fish lake on surface water by using isotopic techniques. The values of stable isotopes of 18O range-7.78 – 8.10‰, -7.43 – -8.11‰, -3.2 – 3.3‰ and -6.0 – 6.2‰. The values of Deuterium range -45 – 45.56‰, -46.7 – -45.72‰, -37.87 – 37.98‰ and -28.4 – -29.7‰ in the fish lake, Tigris river, groundwater and water drainage, respectively. The results show there is no effect of interaction between the fish lake and Tigers River due to a short distance between the river and the lakes, lack evaporation effects and high flow rate

Systemic Therapy of Bronchioloalveolar Carcinoma: Results of the First IASLC/ASCO Consensus Conference on Bronchioloalveolar Carcinoma

Introduction:Bronchioloalveolar carcinoma (BAC) is a subtype of adenocarcinoma of the lung with unique pathological, clinical, and molecular characteristics.Methods:This consensus conference group reviewed studies performed specifically in BAC and data from patients with BAC who were included in clinical trials of all non–small-cell lung cancer (NSCLC) subtypes.Results:Although BAC as defined by the World Health Organization represents less than 5% of adenocarcinomas, as many as 20% of adenocarcinomas have BAC features. These latter tumors are more likely to have mutations in the epidermal growth factor receptor (EGFR) gene and to be sensitive to the EGFR tyrosine kinase inhibitors gefitinib and erlotinib. Although most patients are men and have a history of smoking cigarettes, proportionally more are women and never smokers. Patients with BAC are routinely treated with drugs and regimens appropriate for patients with all subtypes of adenocarcinoma of the lung; four studies have been performed specifically in this disease.Conclusions:There is insufficient evidence to confirm or refute the assertion that the sensitivity of BAC to chemotherapy is different from that of other lung cancer histologic types. The unique clinical and molecular characteristics associated with BAC led this panel to conclude that future clinical trials should be designed specifically for persons with BAC. Recommendations for trial design and research questions are proposed

2 Ocena porównawcza dawki w odbytnicy obliczonej dwiema metodami w brachyterapii śródjamowej chorych na raka szyjki i trzonu macicy

WstępW Klinice Onkologii i Radioterapii AMG od 1985 roku stosowana jest brachyterapia cezowa przy użyciu aparatu Selektron LDR. Dawkę maksymalną w odbytnicy do roku 1995 wyznaczano stosując wprowadzony doodbytniczo drucik ołowiany w osłonce plastikowej (R1), a w ostatnich latach zgodnie z zaleceniami Raportu 38 ICRU, dodatkowo oznacza się ją lokalizując tylną ścianę pochwy przez tamponowanie gazikami zawierającymi cieniującą na radiogramach nitkę (R2).Cel pracyPorównanie dawek fizycznych (R1 i R2) i równoważnych im dawek biologicznych (r1 i r2) w odbytnicy, obliczonych powyższymi dwiema metodami.Materiał i metodyAnaliza dotyczyła 124 aplikacji cezu u 102 chorych na raka szyjki lub trzonu macicy, leczonych śródjamowo podczas skojarzonego lub pooperacyjnego napromieniania. Rozkład dawki w miednicy małej obliczano za pomocą komputerowych systemów planowania, wykorzystując 2 prostopadłe radiologiczne zdjęcia lokalizacyjne.Dawki biologiczne obliczono przy pomocy modelu liniowo-kwadratowego, przyjmując α/β=4.WynikiW 83% przypadków wartość bezwzględna dawek R1 była niższa od R2. Wartości średnie dawek R1 i R2 oraz r1 i r2 wynosiły odpowiednio: 13,2 ±4,3 Gy i 16,9 ±4,4 Gy oraz 16,8 ±8,0 Gy i 24,0 ±9,6 Gy. Średnia różnica między R1 i R2 oraz r1 i r2 wynosiła 3,7 Gy (95% CI, 3,03–4,41 Gy) i 7,2 Gy (95% CI, 5,77–8,56 Gy), odpowiednio i jest statystycznie znamienna (