20 research outputs found
Mini-grand canonical ensemble: chemical potential in the solvation shell
Quantifying the statistics of occupancy of solvent molecules in the vicinity
of solutes is central to our understanding of solvation phenomena. Number
fluctuations in small `solvation shells' around solutes cannot be described
within the macroscopic grand canonical framework using a single chemical
potential that represents the solvent `bath'. In this communication, we
hypothesize that molecular-sized observation volumes such as solvation shells
are best described by coupling the solvation shell with a mixture of particle
baths each with its own chemical potential. We confirm our hypotheses by
studying the enhanced fluctuations in the occupancy statistics of hard sphere
solvent particles around a distinguished hard sphere solute particle.
Connections with established theories of solvation are also discussed
Role of Internal Motions and Molecular Geometry on the NMR Relaxation of Hydrocarbons
The role of internal motions and molecular geometry on H NMR relaxation
times in hydrocarbons is investigated using MD (molecular dynamics)
simulations of the autocorrelation functions for in{\it tra}molecular
and in{\it ter}molecular H-H dipole-dipole interactions
arising from rotational () and translational () diffusion, respectively.
We show that molecules with increased molecular symmetry such as neopentane,
benzene, and isooctane show better agreement with traditional hard-sphere
models than their corresponding straight-chain -alkane, and furthermore that
spherically-symmetric neopentane agrees well with the Stokes-Einstein theory.
The influence of internal motions on the dynamics and relaxation of
-alkanes are investigated by simulating rigid -alkanes and comparing with
flexible (i.e. non-rigid) -alkanes. Internal motions cause the rotational
and translational correlation-times to get significantly shorter
and the relaxation times to get significantly longer, especially for
longer-chain -alkanes. Site-by-site simulations of H's along the chains
indicate significant variations in and across the chain,
especially for longer-chain -alkanes. The extent of the stretched (i.e.
multi-exponential) decay in the autocorrelation functions are
quantified using inverse Laplace transforms, for both rigid and flexible
molecules, and on a site-by-site bases. Comparison of measurements
with the site-by-site simulations indicate that cross-relaxation (partially)
averages-out the variations in and across the chain of
long-chain -alkanes. This work also has implications on the role of
nano-pore confinement on the NMR relaxation of fluids in the organic-matter
pores of kerogen and bitumen
Apolar Behavior of Hydrated Calcite (10{-1}4) Surface Assists in Naphthenic Acid Adsorption
Water molecules bind strongly to the polar calcite surface and form a surface adsorbed layer that has properties akin to an apolar surface. This has important implications for understanding the thermodynamic driving forces underlying the adsorption of acid groups from crude oil, in particular naphthenic acid, onto calcite. Free energy calculations show that naphthenic acid binds favorably to the water mono-layer adsorbed on the calcite surface. But to bond directly to the calcite, a free energy barrier has to be overcome to expel the intervening layer of water. Further, naphthenic acids with longer alkyl chains bind with lower free energy to the calcite surface than those with shorter alkyl chains, and, for the same chain length, branching also enhances adsorption. To better understand this behavior, for a specified alkyl chain length we study adsorption at different temperatures. Consistent with experiments, we find that adsorption is enhanced at higher temperatures. Examining the enthalpic and entropic contributions to adsorption shows that adsorption of naphthenic acid is entropically favored.<br /