Hybrid iterative wavefront shaping for high-speed focusing through scattering media

A major limiting factor of optical imaging in biological applications is the diffusion of light by tissue, preventing focusing at depths greater than ~1 mm in the body. To overcome this issue, phase-based wavefront shaping alters the phase of sections of the incident wavefront to counteract aberrations in phase caused by scattering. This enables focusing through scattering media beyond the optical diffusion limit and increases signal compared to amplitude-based compensation. However, in previous studies, speed of optimization has typically been limited by the use of a liquid crystal spatial light modulator (SLM) for measurement and display. SLMs usually have refresh rates of less than 100 Hz and require much longer than the speckle correlation time of tissue in vivo, usually on the order of milliseconds, to determine the optimal wavefront. Here, we present a phase-based iterative wavefront shaping method based on an onaxis digital micromirror device (DMD) in conjunction with an electro-optic modulator (EOM) for measurement and a fast SLM for display. By combining phase modulation from an EOM with the modal selection of the DMD, we take advantage of DMDs higher refresh rate, approximately 23 kHz, for iterative phase measurement. The slower SLM requires one update for display following the rapid determination of the optimal wavefront via the DMD, allowing for high-speed wavefront shaping. Using this system, we are able to focus through scattering media using 64 modes in under 8 milliseconds, on the order of the speckle correlation time for tissue in vivo

Hybridized wavefront shaping for high-speed, high-efficiency focusing through dynamic diffusive media

One of the prime limiting factors of optical imaging in biological applications is the diffusion of light by tissue, which prevents focusing at depths greater than the optical diffusion limit (typically ∼1  mm). To overcome this challenge, wavefront shaping techniques that use a spatial light modulator (SLM) to correct the phase of the incident wavefront have recently been developed. These techniques are able to focus light through scattering media beyond the optical diffusion limit. However, the low speeds of typically used liquid crystal SLMs limit the focusing speed. Here, we present a method using a digital micromirror device (DMD) and an electro-optic modulator (EOM) to measure the scattering-induced aberrations, and using a liquid crystal SLM to apply the correction to the illuminating wavefront. By combining phase modulation from an EOM with the DMD’s ability to provide selective illumination, we exploit the DMD’s higher refresh rate for phase measurement. We achieved focusing through scattering media in less than 8 ms, which is sufficiently short for certain in vivo applications, as it is comparable to the speckle correlation time of living tissue

High-speed alignment optimization of digital optical phase conjugation systems based on autocovariance analysis in conjunction with orthonormal rectangular polynomials

Digital optical phase conjugation (DOPC) enables many optical applications by permitting focusing of light through scattering media. However, DOPC systems require precise alignment of all optical components, particularly of the spatial light modulator (SLM) and camera, in order to accurately record the wavefront and perform playback through the use of time-reversal symmetry. We present a digital compensation technique to optimize the alignment of the SLM in five degrees of freedom, permitting focusing through thick scattering media with a thickness of 5 mm and transport scattering coefficient of 2.5  mm  −  1 while simultaneously improving focal quality, as quantified by the peak-to-background ratio, by several orders of magnitude over an unoptimized alignment

Amplitude-masked photoacoustic wavefront shaping: theory and application in flowmetry

Optical diffusion in scattering media prevents focusing beyond shallow depths, causing optical imaging and sensing to suffer from low optical intensities, resulting in low signal-to-noise ratios (SNR). Here, we demonstrate focusing using a fast binary-amplitude digital micromirror device to characterize the transmission modes of the scattering medium. We then identify and selectively illuminate the transmission modes which contribute constructively to the intensity at the optical focus. Applying this method to photoacoustic flowmetry, we increased the optical intensity at the focus six-fold, and showed that the corresponding increase in SNR allows particle flow to be measured

Focusing light through scattering media by polarization modulation based generalized digital optical phase conjugation

Optical scattering prevents light from being focused through thick biological tissue at depths greater than ∼1 mm. To break this optical diffusion limit, digital optical phase conjugation (DOPC) based wavefront shaping techniques are being actively developed. Previous DOPC systems employed spatial light modulators that modulated either the phase or the amplitude of the conjugate light field. Here, we achieve optical focusing through scattering media by using polarization modulation based generalized DOPC. First, we describe an algorithm to extract the polarization map from the measured scattered field. Then, we validate the algorithm through numerical simulations and find that the focusing contrast achieved by polarization modulation is similar to that achieved by phase modulation. Finally, we build a system using an inexpensive twisted nematic liquid crystal based spatial light modulator (SLM) and experimentally demonstrate light focusing through 3-mm thick chicken breast tissue. Since the polarization modulation based SLMs are widely used in displays and are having more and more pixel counts with the prevalence of 4 K displays, these SLMs are inexpensive and valuable devices for wavefront shaping

Assessing the effects of the first 2 years of industry-led badger culling in England on the incidence of bovine tuberculosis in cattle in 2013–2015

Culling badgers to control the transmission of bovine tuberculosis (TB) between this wildlife reservoir and cattle has been widely debated. Industry-led culling began in Somerset and Gloucestershire between August and November 2013 to reduce local badger populations. Industry-led culling is not designed to be a randomised and controlled trial of the impact of culling on cattle incidence. Nevertheless, it is important to monitor the effects of the culling and, taking the study limitations into account, perform a cautious evaluation of the impacts. A standardised method for selecting areas matched to culling areas in factors found to affect cattle TB risk has been developed to evaluate the impact of badger culling on cattle TB incidence. The association between cattle TB incidence and badger culling in the first two years has been assessed. Descriptive analyses without controlling for confounding showed no association between culling and TB incidence for Somerset, or for either of the buffer areas for the first two years since culling began. A weak association was observed in Gloucestershire for Year 1 only. Multivariable analysis adjusting for confounding factors showed that reductions in TB incidence were associated with culling in the first two years in both the Somerset and Gloucestershire intervention areas when compared to areas with no culling (IRR: 0.79, 95%CI: 0.72-0.87, p<0.001 and IRR: 0.42, 95%CI: 0.34-0.51, p<0.001 respectively). An increase in incidence was associated with culling in the 2 km buffer surrounding the Somerset intervention area (IRR: 1.38, 95%CI: 1.09-1.75, p=0.008), but not in Gloucestershire (IRR: 0.91, 95%CI: 0.77-1.07, p=0.243). As only two intervention areas with two years’ of data are available for analysis, and the biological cause-effect relationship behind the statistical associations is difficult to determine, it would be unwise to use these findings to develop generalisable inferences about the effectiveness of the policy at present

Warming by 1°C drives species and assemblage level responses in Antarctica’s marine shallows

Forecasting assemblage-level responses to climate change remains one of the greatest challenges in global ecology [1 , 2 ]. Data from the marine realm are limited because they largely come from experiments using limited numbers of species [3 ], mesocosms whose interior conditions are unnatural [4 ], and long-term correlation studies based on historical collections [5 ]. We describe the first ever experiment to warm benthic assemblages to ecologically relevant levels in situ. Heated settlement panels were used to create three test conditions: ambient and 1°C and 2°C above ambient (predicted in the next 50 and 100 years, respectively [6]). We observed massive impacts on a marine assemblage, with near doubling of growth rates of Antarctic seabed life. Growth increases far exceed those expected from biological temperature relationships established more than 100 years ago by Arrhenius. These increases in growth resulted in a single “r-strategist” pioneer species (the bryozoan Fenestrulina rugula) dominating seabed spatial cover and drove a reduction in overall diversity and evenness. In contrast, a 2°C rise produced divergent responses across species growth, resulting in higher variability in the assemblage. These data extend our ability to expand, integrate, and apply our knowledge of the impact of temperature on biological processes to predict organism, species, and ecosystem level ecological responses to regional warming

Hybrid iterative wavefront shaping for high-speed focusing through scattering media

A major limiting factor of optical imaging in biological applications is the diffusion of light by tissue, preventing focusing at depths greater than ~1 mm in the body. To overcome this issue, phase-based wavefront shaping alters the phase of sections of the incident wavefront to counteract aberrations in phase caused by scattering. This enables focusing through scattering media beyond the optical diffusion limit and increases signal compared to amplitude-based compensation. However, in previous studies, speed of optimization has typically been limited by the use of a liquid crystal spatial light modulator (SLM) for measurement and display. SLMs usually have refresh rates of less than 100 Hz and require much longer than the speckle correlation time of tissue in vivo, usually on the order of milliseconds, to determine the optimal wavefront. Here, we present a phase-based iterative wavefront shaping method based on an onaxis digital micromirror device (DMD) in conjunction with an electro-optic modulator (EOM) for measurement and a fast SLM for display. By combining phase modulation from an EOM with the modal selection of the DMD, we take advantage of DMDs higher refresh rate, approximately 23 kHz, for iterative phase measurement. The slower SLM requires one update for display following the rapid determination of the optimal wavefront via the DMD, allowing for high-speed wavefront shaping. Using this system, we are able to focus through scattering media using 64 modes in under 8 milliseconds, on the order of the speckle correlation time for tissue in vivo