Rumor Has It...

A curious graduate takes it upon herself to investigate four tales that have become part of campus lore -- and determine what\u27s fact and what\u27s fiction

Arkansas Agricultural Chemical Ground-Water Management Plan

The Arkansas Agricultural Chemical Ground-Water Management Plan (SMP) is based on the Draft State Pesticide Ground- Water Management Plan Guidance and The Pesticides and Ground-Water Protection Strategy prepared by the U.S. Environmental Protection Agency (EPA). The need for a plan to protect ground water from contamination by agricultural chemicals and agents arises from evidence nationwide that using these chemicals can, in some instances, lead to contamination. In February 1988, EPA proposed a strategy to regulate certain pesticides by prohibiting their use in areas vulnerable to leaching unless a state develops and implements an acceptable management plan. The advantage of a state plan as opposed to a federal plan is that a state plan can provide protection for ground-water resources without unnecessarily restricting pesticide use. State plans can be more sensitive to local conditions such as soil types, farming practices and hydrogeological considerations

eXframe: reusable framework for storage, analysis and visualization of genomics experiments

<p>Abstract</p> <p>Background</p> <p>Genome-wide experiments are routinely conducted to measure gene expression, DNA-protein interactions and epigenetic status. Structured metadata for these experiments is imperative for a complete understanding of experimental conditions, to enable consistent data processing and to allow retrieval, comparison, and integration of experimental results. Even though several repositories have been developed for genomics data, only a few provide annotation of samples and assays using controlled vocabularies. Moreover, many of them are tailored for a single type of technology or measurement and do not support the integration of multiple data types.</p> <p>Results</p> <p>We have developed eXframe - a reusable web-based framework for genomics experiments that provides 1) the ability to publish structured data compliant with accepted standards 2) support for multiple data types including microarrays and next generation sequencing 3) query, analysis and visualization integration tools (enabled by consistent processing of the raw data and annotation of samples) and is available as open-source software. We present two case studies where this software is currently being used to build repositories of genomics experiments - one contains data from hematopoietic stem cells and another from Parkinson's disease patients.</p> <p>Conclusion</p> <p>The web-based framework eXframe offers structured annotation of experiments as well as uniform processing and storage of molecular data from microarray and next generation sequencing platforms. The framework allows users to query and integrate information across species, technologies, measurement types and experimental conditions. Our framework is reusable and freely modifiable - other groups or institutions can deploy their own custom web-based repositories based on this software. It is interoperable with the most important data formats in this domain. We hope that other groups will not only use eXframe, but also contribute their own useful modifications.</p

Maternal age at maturation underpins contrasting behaviour in offspring

In species where parental care occurs primarily via the provisioning of eggs, older females tend to produce larger offspring that have better fitness prospects. Remarkably however, a relationship between age of mother and fitness of offspring has also been reported independently of effects on offspring size suggesting that there may be other factors at play. Here, using experimental matings between wild Atlantic salmon that differed in their age at sexual maturation, we demonstrate distinct size-independent variation in the behaviour of their offspring that was related to the maturation age of the mother (but not the father). We found that when juvenile salmon were competing for feeding territories, offspring of early-maturing mothers were more aggressive than those of late-maturing mothers, but were out-competed for food by them. This is the first demonstration of a link between natural variation in parental age at maturation and variation in offspring behaviou