Friction on a Quantized Vortex in a Superfluid

We obtain the explicit expression of the friction on a moving quantized vortex, following the formulation of Thouless, Ao and Niu. It is shown that the friction on a moving vortex is sensitive to details but does not change the transverse force. We provide a general thermodynamic interpretation for the mutual independence of the transverse force and the friction. The friction is evaluated for the case of quasiparticle contributions in a clean fermionic superfluid, showing a new feature of logarithmic divergence.Comment: latex, minor change

Dirac point resonances due to atoms and molecules adsorbed on graphene and transport gaps and conductance quantization in graphene nanoribbons with covalently bonded adsorbates

We present a tight binding theory of the Dirac point resonances due to adsorbed atoms and molecules on an infinite 2D graphene sheet based on the standard tight binding model of the graphene p-band electronic structure and the extended Huckel model of the adsorbate and nearby graphene carbon atoms. The relaxed atomic geometries of the adsorbates and graphene are calculated using density functional theory. Our model includes the effects of the local rehybridization of the graphene from the sp^2 to sp^3 electronic structure that occurs when adsorbed atoms or molecules bond covalently to the graphene. Unlike in previous tight-binding models of Dirac point resonances, adsorbed species with multiple extended molecular orbitals and bonding to more than one graphene carbon atom are treated. More accurate and more general analytic expressions for the Green's function matrix elements that enter the T-matrix theory of Dirac point resonances than have been available previously are obtained. We study H, F, OH and O adsorbates on graphene and for each we find a strong scattering resonance (two resonances for O) near the Dirac point of graphene, by far the strongest and closest to the Dirac point being the resonance for H. We extract a minimal set of tight binding parameters that can be used to model resonant electron scattering and electron transport in graphene and graphene nanostructures with adsorbed H, F, OH and O accurately and efficiently. We also compare our results for the properties of Dirac point resonances due to adsorbates on graphene with those obtained by others using density functional theory-based electronic structure calculations, and discuss their relative merits. We then present calculations of electronic quantum transport in graphene nanoribbons with these adsorbed species...Comment: 21 pages, 9 figure

Vortex Dynamics within the BCS Theory

We outline a conventional path integral derivation of the transverse force and the friction for a vortex in a superconductor based on the BCS theory. The derivation is valid in both clean and dirty limits at both zero and finite temperatures. The transverse force is found to be precisely as what has been obtained by Ao and Thouless using the Berry's phase method. The friction is essentially the same as the Bardeen and Stephen's result. Errors in some previous representive microscopic derivations are discussed.Comment: Revtex. the Invited Talk in M2S-HTSC-V conference in Beijing, Feb. 28-March 4, 1997. to appear in Physica

Effects of Geometric Phases in Josephson Junction Arrays

We show that the en route vortex velocity dependent part of the Magnus force in a Josephson junction array is effectively zero, and predict zero Hall effect in the classical limit. However, geometric phases due to the finite superfluid density at superconductor grains have a profound influence on the quantum dynamics of vortices. Subsequently we find rich and complex Hall behaviors analogous to the Thouless-Kohmoto-Nightingale-den Nijs effect in the quantum regime.Comment: Latex, 11 pages, appeared in Phys. Rev. Lett. v.77, 562 (1996) with minor change

Invalidity of Classes of Approximated Hall Effect Calculations

In this comment, I point out a number of approximated derivations for the effective equation of motion, now been applied to d-wave superconductors by Kopnin and Volovik are invalid. The major error in those approximated derivations is the inappropriate use of the relaxation time approximation in force-force correlation functions, or in force balance equations, or in similar variations. This approximation is wrong and unnecessary.Comment: final version, minor changes, to appear in Phys. Rev. Let

Nonlinear Schr\"odinger Equation for Superconductors

Using the Hartree-Fock-Bogoliubov factorization of the density matrix and the Born-Oppenheimer approximation we show that the motion of the condensate satisfies a nonlinear Schr\"odinger equation in the zero temperature limit. The Galilean invariance of the equation is explicitly manifested. {}From this equation some general properties of a superconductor, such as Josephson effects, the Magnus force, and the Bogoliubov-Anderson mode can be obtained readily.Comment: Latex, 12 page

A Case Report of Systemic Sclerosis Complicated by Biventricular Heart Failure, Pulmonary Hypertension and Review of Literature

Background: Systemic sclerosis (SSc) is an autoimmune connective tissue disorder whose aetiology is not fully understood. Skin fibrosis and visceral organs involvement are the hallmarks, and the heart could be disproportionately or subtly involved. Cardiovascular manifestations could include arrhythmias, pericarditis, myocardial fibrosis, pulmonary hypertension and congestive heart failure. Pulmonary involvement could cause lung fibrosis, arteriolar thickening, and pulmonary hypertension. The presence of these manifestations confers a poor prognosis. Case Report: The case report presents a 50-year-old male patient with generalized skin sclerosis, hypo and hyperpigmented skin lesions, dyspnoea at rest, displaced apical impulse, tachycardia and pan-systolic murmur at the apex radiating to the axilla. Echo cardiography features showed ejection fraction of 33.3% with dilated atrial and ventricular chambers. Conclusions: We present a case systemic sclerosis complicated by biventricular heart failure and pulmonary hypertension

Calculating Biological Behaviors of Epigenetic States in Phage lambda Life Cycle

Gene regulatory network of lambda phage is one the best studied model systems in molecular biology. More 50 years of experimental study has provided a tremendous amount of data at all levels: physics, chemistry, DNA, protein, and function. However, its stability and robustness for both wild type and mutants has been a notorious theoretical/mathematical problem. In this paper we report our successful calculation on the properties of this gene regulatory network. We believe it is of its first kind. Our success is of course built upon numerous previous theoretical attempts, but following 3 features make our modeling uniqu: 1) A new modeling method particular suitable for stability and robustness study; 2) Paying a close attention to the well-known difference of in vivo and in vitro; 3) Allowing more important role for noise and stochastic effect to play. The last two points have been discussed by two of us (Ao and Yin, cond-mat/0307747), which we believe would be enough to make some of previous theoretical attempts successful, too. We hope the present work would stimulate a further interest in the emerging field of gene regulatory network.Comment: 16 pages, 3 figures, 1 tabl