Assessment of the bacterial community structure in a Brazilian clay soil treated with atrazine

In the present paper, the bacterial communities in two soils, one from an agricultural sugarcane cropped field and the other from an unperturbed soil with similar geopedological characteristics, were characterized using the Fluorescence In Situ Hybridization (FISH) method. FISH consists of in situ identification of bacteria using fluorescent labeled 16S rRNA targeted oligonucleotide probes visualizable under epifluorescence microscope. In the cultivated soil, in line with agricultural practice, the pre-emergence herbicide atrazine had been regularly applied each year at a concentration of 5 L/ha. The Shannon Diversity and Evenness Indices were also calculated using the phylogenetic data obtained from the FISH analysis. Although, at the sampling time (6 months after soil atrazine treatment), no residual herbicide concentration was found, the overall bacterial community results show a lower diversity and evenness in the agricultural soil than in the unperturbed one, demonstrating how microbiological indicators are sensitive to anthropogenic disturbance. In the natural soil, the dominant groups were α-Proteobacteria, β-Proteobacteria, and γ-Proteobacteria (representing more than 50 % of the bacteria), but in the agricultural soil, their abundance decreased significantly and represented just 31 % of the bacteria domain

Plant microbial fuel cells for recovering contaminated environments

Plant Microbial Fuel Cells (PMFCs) are bioelectrochemical systems able to convert solar energy into bioelectricity with the support of rhizosphere microbial populations. The simultaneous bioelectricity and biomass production makes PMFCs an interesting nature-based solution for promoting not only energy production, but also soil decontamination. This review reports the main bacterial groups involved in microbial fuel cell systems and key factors influencing their performances in plant presence. In detail, to implement PMFCs for remediation of contaminated soils, it is firstly necessary to know chemical characteristics of pollutants, their concentrations, soil physico-chemical characteristics and soil microbial community structure and functioning. Then, based on characterization data of the contaminated soil, a plant species able to resist pollutant toxicity and promote soil phytoremediation processes (e.g. phyto-extraction, phyto-stabilization, phyto-degradation) can be selected, also based on the climatic characteristics of the study area. Finally, electrode materials and their configurations need to be designed to ensure an efficient plant growth, adequate electron transfer and the best possible generation of bioelectricity and at the same time promoting the degradative activity of microorganisms

Germination, root elongation, and photosynthetic performance of plants exposed to sodium lauryl ether sulfate (SLES). An emerging contaminant

The anionic surfactant SLES (sodium lauryl ether sulfate) is an emerging contaminant, being the main component of foaming agents that are increasingly used by the tunnel construction industry. To fill the gap of knowledge about the potential SLES toxicity on plants, acute and chronic effects were assessed under controlled conditions. The acute ecotoxicological test was performed on Lepidum sativum L. (cress) and Zea mays L. (maize). Germination of both species was not affected by SLES in soil, even at concentrations (1200 mg kg−1) more than twice higher than the maximum realistic values found in contaminated debris, thus confirming the low acute SLES toxicity on terrestrial plants. The root elongation of the more sensitive species (cress) was instead reduced at the highest SLES concentration. In the chronic phytotoxicity experiment, photosynthesis of maize was downregulated, and the photosynthetic performance (PITOT) significantly reduced already under realistic exposures (360 mg kg−1), owing to the SLES ability to interfere with water and/or nutrients uptake by roots. However, such reduction was transient, likely due to the rapid biodegradation of the surfactant by the soil microbial community. Indeed, SLES amount decreased in soil more than 90% of the initial concentration in only 11 days. A significant reduction of the maximum photosynthetic capacity (Pnmax) was still evident at the end of the experiment, suggesting the persistence of negative SLES effects on plant growth and productivity. Overall results, although confirming the low phytotoxicity and high biodegradability of SLES in natural soils, highlight the importance of considering both acute and nonlethal stress effects to evaluate the environmental compatibility of soil containing SLES residues

Groundwater Autochthonous Microbial Communities as Tracers of Anthropogenic Pressure Impacts: Example from a Municipal Waste Treatment Plant (Latium, Italy)

The groundwater behavior at a municipal solid waste disposal dump, located in Central Italy, was studied using a multi-parameter monitoring over 1 year consisting of 4 seasonal samples. The hydrological and hydrogeological dynamics of water circulation, microbiological parameters (microbial abundance and cell viability of the autochthonous microbial community), dissolved organic carbon, and several contaminants were evaluated and related to the geological structures in both two and three dimensions and used for geostatistical analysis in order to obtain 3D maps. Close relationships between geological heterogeneity, water circulation, pollutant diffusion, dissolved organic carbon, and cell viability were revealed. The highest cell viability values were found with dissolved organic carbon (DOC) values ≤0.5 mg/L; above this value, DOC negatively affected the microbial community. The highest DOC values were detected in groundwater at some sampling points within the site indicating its probable origin from the waste disposal dump. Although legislation limits for the parameters measured were not exceeded (except for a contaminant in one piezometer), the 1-year multi-parameter monitoring approach made it possible to depict both the dynamics and the complexity of the groundwater flux and, with "non-legislative parameters" such as microbial cell viability and DOC, identify the points with the highest vulnerability and their origin. This approach is useful for identifying the most vulnerable sites in a groundwater body

Celle a combustibile microbiche terrestri: uno strumento efficace nel recupero di suoli contaminati e nella produzione di energia.

Una cella a combustibile microbica (MFC) è un sistema bio-elettrochimico che utilizza un microrganismo attivo come biocatalizzatore per la produzione di elettricità. Essa è costituita da due comparti, uno anodico ed uno catodico, separati da una membrana di scambio protonico. L’energia chimica di legame, disponibile grazie alla presenza di un substrato biodegradabile, viene trasformata direttamente in energia elettrica per azione microbica, che catalizza la rimozione degli elettroni dal substrato. I batteri presenti nella camera anodica, o comunque nel mezzo in cui è immerso l’anodo, sono in grado di convertire un’enorme varietà di substrati organici (acetato, glucosio, cellulosa, reflui di varia origine, contaminanti organici) in CO2, acqua ed energia. Tra le MFC, le Celle a Combustibile Microbiche Terrestri (Terrestrial Microbial Fuel Cells - TMFC), hanno come elettrolita il suolo. Esso è una matrice molto più complessa rispetto all’acqua, variando nella composizione granulometrica, nella capacita di ritenzione idrica, nella capacità di scambio cationico, nonché nella distribuzione dei contaminanti; pertanto le TMFC sono dei dispositivi di cui è ancora necessario esplorare tutte le potenzialità di applicazione per il recupero di suoli contaminati

Pesticide risk assessment and management in a globally changing world—report from a European interdisciplinary workshop

[Departement_IRSTEA]Eaux [TR1_IRSTEA]BELCA [Axe_IRSTEA]DTAM-QT2-ADAPTATION [TR2_IRSTEA]ARCEAU [TR2_IRSTEA]DTAMGlobal climate change will affect worldwide agriculture in many ways. The anticipated or already occurring changes raise concerns about the sustainability of production and the ability of agriculture to feed human populations. This appeals to sustainable agriculture providing ecosystem services more efficiently than today, and accordingly to substantial evolutions of pesticide risk assessment (RA) and risk management (RM). The RA/RM issues were discussed by two European research networks in a 2011 workshop. The RA-RM-monitoring conceptual cycle tends to be virtual, with poor connections between certain steps. The design of more comprehensive emissions scenarios could improve the accuracy of predicted runoff transport, while the microcosm/mesocosm approach could help establish causal relationships between fate / exposure and populations / communities. Combined with ecological modelling, effects can be extrapolated to higher spatial and temporal scales. Risk management of diffuse sources should be designed simultaneously at the watershed and individual plot scales. Monitoring is key to assessing the effectiveness of risk reduction measures reduce and evaluate the overall quality of the aquatic compartment. More flexible monitoring strategies clearly linked to RM decisions are therefore needed. Although some technical questions remain, it is time to apply passive samplers more routinely. A set of research and development needs covering the whole RA/RM cycle is listed in conclusion

Screening of benzodiazepines in thirty European rivers

Pharmaceuticals as environmental contaminants have received a lot of interest over the past decade but, for several pharmaceuticals, relatively little is known about their occurrence in European surface waters. Benzodiazepines, a class of pharmaceuticals with anxiolytic properties, have received interest due to their behavioral modifying effect on exposed biota. In this study, our results show the presence of one or more benzodiazepine(s) in 86% of the analyzed surface water samples (n = 138) from 30 rivers, representing seven larger European catchments. Of the 13 benzodiazepines included in the study, we detected 9, which together showed median and mean concentrations (of the results above limit of quantification) of 5.4 and 9.6 ng L−1, respectively. Four benzodiazepines (oxazepam, temazepam, clobazam, and bromazepam) were the most commonly detected. In particular, oxazepam had the highest frequency of detection (85%) and a maximum concentration of 61 ng L−1. Temazepam and clobazam were found in 26% (maximum concentration of 39 ng L−1) and 14% (maximum concentration of 11 ng L−1) of the samples analyzed, respectively. Finally, bromazepam was found only in Germany and in 16 out of total 138 samples (12%), with a maximum concentration of 320 ng L−1. This study clearly shows that benzodiazepines are common micro-contaminants of the largest European river systems at ng L−1 levels. Although these concentrations are more than a magnitude lower than those reported to have effective effects on exposed biota, environmental effects cannot be excluded considering the possibility of additive and sub-lethal effects

Rhizosphere Microbial Communities and Heavy Metals

The rhizosphere is a microhabitat where there is an intense chemical dialogue between plants and microorganisms. The two coexist and develop synergistic actions, which can promote plants’ functions and productivity, but also their capacity to respond to stress conditions, including heavy metal (HM) contamination. If HMs are present in soils used for agriculture, there is a risk of metal uptake by edible plants with subsequent bioaccumulation in humans and animals and detrimental consequences for their health. Plant productivity can also be negatively affected. Many bacteria have defensive mechanisms for resisting heavy metals and, through various complex processes, can improve plant response to HM stress. Bacteria-plant synergic interactions in the rhizosphere, as a homeostatic ecosystem response to HM disturbance, are common in soil. However, this is hard to achieve in agroecosystems managed with traditional practices, because concentrating on maximizing crop yield does not make it possible to establish rhizosphere interactions. Improving knowledge of the complex interactions mediated by plant exudates and secondary metabolites can lead to nature-based solutions for plant health in HM contaminated soils. This paper reports the main ecotoxicological effects of HMs and the various compounds (including several secondary metabolites) produced by plant-microorganism holobionts for removing, immobilizing and containing toxic elements

Recent Advances in Bacterial Degradation of Hydrocarbons

Hydrocarbons occur in fossil fuels such as crude oil and consist mainly of hydrogen and carbon. Although they are natural chemicals, crude oil refining results in commercial products with new physico-chemical properties, which can increase their complexity and toxicity, and hamper their degradation. The presence of biodiverse natural microbial communities is a prerequisite for an effective homeostatic response to the various hydrocarbons, that contaminate ecosystems. However, their removal depends on the compartment contaminated (water, sediment, soil), their molecular weight, and their toxicity not hampering microbial activity. This paper reports different bacterial species involved in the biodegradation of aliphatic and aromatic hydrocarbons. Hydrocarbon contamination is generally due to the co-presence of a mixture of these chemicals, and their removal from the environment cannot rely on only a single species but generally requires bacterial consortia. Versatile bacterial metabolism relies on specific genes encoding the key enzymes involved in the peripheral metabolic and central metabolic pathways for degrading aliphatic and polycyclic aromatic hydrocarbons. Although microbial metabolism can have the potential for natural attenuation of these contaminants, hydrocarbon bioremediation, through biostimulation (e.g., use of surfactants, plants, earthworms, and nanoparticles) and bioaugmentation, can be a valid tool for removing them from actually contaminated soil, freshwater, groundwater, and seawater

Overview of Direct and Indirect Effects of Antibiotics on Terrestrial Organisms

Antibiotics (ABs) have made it possible to treat bacterial infections, which were in the past untreatable and consequently fatal. Regrettably, their use and abuse among humans and livestock led to antibiotic resistance, which has made them ineffective in many cases. The spread of antibiotic resistance genes (ARGs) and bacteria is not limited to nosocomial environments, but also involves water and soil ecosystems. The environmental presence of ABs and ARGs is a hot topic, and their direct and indirect effects, are still not well known or clarified. A particular concern is the presence of antibiotics in agroecosystems due to the application of agro-zootechnical waste (e.g., manure and biosolids), which can introduce antibiotic residues and ARGs to soils. This review provides an insight of recent findings of AB direct and indirect effects on terrestrial organisms, focusing on plant and invertebrates. Possible changing in viability and organism growth, AB bioaccumulation, and shifts in associated microbiome composition are reported. Oxidative stress responses of plants (such as reactive oxygen species production) to antibiotics are also described