67 research outputs found
Maximally-fast coarsening algorithms
We present maximally-fast numerical algorithms for conserved coarsening
systems that are stable and accurate with a growing natural time-step . For non-conserved systems, only effectively finite timesteps
are accessible for similar unconditionally stable algorithms. We compare the
scaling structure obtained from our maximally-fast conserved systems directly
against the standard fixed-timestep Euler algorithm, and find that the error
scales as -- so arbitrary accuracy can be achieved.Comment: 5 pages, 3 postscript figures, Late
Dynamical network stability analysis of multiple biological ages provides a framework for understanding the aging process
Widespread interest in non-destructive biomarkers of aging has led to a curse
of plenty: a multitude of biological ages that each proffers a 'true'
health-adjusted age of an individual. While each measure provides salient
information on the aging process, they are each univariate, in contrast to the
"hallmark" and "pillar" theories of aging which are explicitly
multidimensional, multicausal and multiscale. Fortunately, multiple biological
ages can be systematically combined into a multidimensional network
representation. The interaction network between these biological ages permits
analysis of the multidimensional effects of aging, as well as quantification of
causal influences during both natural aging and, potentially, after anti-aging
intervention. The behaviour of the system as a whole can then be explored using
dynamical network stability analysis which identifies new, efficient biomarkers
that quantify long term resilience scores on the timescale between measurements
(years). We demonstrate this approach using a set of 8 biological ages from the
longitudinal Swedish Adoption/Twin Study of Aging (SATSA). After extracting an
interaction network between these biological ages, we observed that
physiological age, a proxy for cardiometabolic health, serves as a central node
in the network, implicating it as a key vulnerability for slow, age-related
decline. We furthermore show that while the system as a whole is stable, there
is a weakly stable direction along which recovery is slow - on the timescale of
a human lifespan. This slow direction provides an aging biomarker which
correlates strongly with chronological age and predicts longitudinal decline in
health - suggesting that it estimates an important driver of age-related
changes.Comment: 65 pages including supplementa
Network dynamical stability analysis of homeostasis reveals "mallostasis": biological equilibria drifting towards worsening health with age
Using longitudinal study data, we dynamically model how aging affects
homeostasis in both mice and humans. We operationalize homeostasis as a
multivariate mean-reverting stochastic process. Our central hypothesis is that
homeostasis causes biomarkers to have stable equilibrium values, but that
deviations from equilibrium of one biomarker can affect other biomarkers
through an interaction network. These interactions preclude analysis of one
biomarker at a time. We therefore looked for age-related changes to homeostasis
using dynamic network stability analysis (eigen-analysis), which transforms
observed biomarker data into independent "natural" variables and determines
their associated recovery rates. Most natural variables remained near
equilibrium and were essentially constant in time. Some natural variables were
unable to equilibrate due to a gradual drift with age in their homeostatic
equilibrium, i.e. allostasis. This drift caused them to accumulate over the
lifespan course. These accumulating variables are natural aging variables.
Their rate of accumulation was correlated with risk of adverse outcomes: death
or dementia onset. We call this tendency for aging organisms to drift towards
an equilibrium position of ever-worsening health "mallostasis". We demonstrate
that the effects of mallostasis on observed biomarkers are spread out through
the interaction network. This could provide a redundancy mechanism to preserve
functioning until multi-system dysfunction emerges at advanced ages.Comment: 11 pages and 5 figures + supplemental (30 pages, 2 tables and 17
figures
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