UV resonance Raman studies of the NaClO<inf>4</inf> dependence of poly-l-lysine Conformation and hydrogen exchange kinetics

We used 204 nm excitation UV Resonance Raman (UVRR) spectroscopy to examine the effects of NaClO4 on the conformation of poly-l-lysine (PLL). The presence of NaClO4 induces the formation of α-helix, π-helix/bulge, and turn conformations. The dependence of the AmIII 3 frequency on the peptide ψ Ramachandran angle allows us to experimentally determine the conformational population distributions and the energy landscape of PLL along the Ramachandran ψ angle. We also used UVRR to measure the NaClO4 concentration dependence of PLL amide hydrogen exchange kinetics. Exchange rates were determined by fitting the D2O exchanging PLL UVRR AmII′ band time evolution. Hydrogen exchange is slowed at high NaClO4 concentrations. The PLL AmII′ band exchange kinetics at 0.0, 0.2, and 0.35 M NaClO4 can be fit by single exponentials, but the AmII′ band kinetics of PLL at 0.8 M NaClO 4 requires a double exponential fit. The exchange rates for the extended conformations were monitored by measuring the Cα-H band kinetics. These kinetics are identical to those of the AmII′ band until 0.8 M NaClO4 whereupon the extended conformation exchange becomes clearly faster than that of the α-helix-like conformations. Our results indicate that ClO4- binds to the PLL backbone to protect it from OH- exchange catalysis. In addition, ClO 4- binding also slows the conformational exchange between the extended and α-helix-like conformations, probably by increasing the activation barriers for conformational interchanges. © 2011 American Chemical Society