Cell-type specific gene expression profiles of leukocytes in human peripheral blood

BACKGROUND: Blood is a complex tissue comprising numerous cell types with distinct functions and corresponding gene expression profiles. We attempted to define the cell type specific gene expression patterns for the major constituent cells of blood, including B-cells, CD4+ T-cells, CD8+ T-cells, lymphocytes and granulocytes. We did this by comparing the global gene expression profiles of purified B-cells, CD4+ T-cells, CD8+ T-cells, granulocytes, and lymphocytes using cDNA microarrays. RESULTS: Unsupervised clustering analysis showed that similar cell populations from different donors share common gene expression profiles. Supervised analyses identified gene expression signatures for B-cells (427 genes), T-cells (222 genes), CD8+ T-cells (23 genes), granulocytes (411 genes), and lymphocytes (67 genes). No statistically significant gene expression signature was identified for CD4+ cells. Genes encoding cell surface proteins were disproportionately represented among the genes that distinguished among the lymphocyte subpopulations. Lymphocytes were distinguishable from granulocytes based on their higher levels of expression of genes encoding ribosomal proteins, while granulocytes exhibited characteristic expression of various cell surface and inflammatory proteins. CONCLUSION: The genes comprising the cell-type specific signatures encompassed many of the genes already known to be involved in cell-type specific processes, and provided clues that may prove useful in discovering the functions of many still unannotated genes. The most prominent feature of the cell type signature genes was the enrichment of genes encoding cell surface proteins, perhaps reflecting the importance of specialized systems for sensing the environment to the physiology of resting leukocytes

Effect of premolar extraction and anchorage type for orthodontic space closure on upper airway dimensions and position of hyoid bone in adults: a retrospective cephalometric assessment

Background. This study aimed to assess the effect of premolar extraction and anchorage type for orthodontic space closure on upper airway dimensions and position of hyoid bone in adults by cephalometric assessment. Methods. This retrospective study was conducted on 142 cephalograms of patients who underwent orthodontic treatment with premolar extraction in four groups of (I) 40 class I patients with bimaxillary protrusion and maximum anchorage, (II) 40 class I patients with moderate crowding and anchorage, (III) 40 class II patients with maximum anchorage, and (IV) 22 skeletal class III patients with maximum anchorage. The dimensions of the nasopharynx, velopharynx, oropharynx, and hypopharynx, and hyoid bone position were assessed on pre- and postoperative lateral cephalograms using AudaxCeph v6.1.4.3951 software. Data were analyzed by the Chi-square test, paired t-test, and Pearson's correlation test (alpha D 0.05). Results. A significant reduction in oropharyngeal, velopharyngeal, and hypopharyngeal airway dimensions was noted in groups I, III, and IV (P <0:001), which was correlated with the magnitude of retraction of upper and lower incisors (r =0:6-0:8). In group II, a significant increase was observed in oropharyngeal and velopharyngeal dimensions (P < 0:001). A significant increase in nasopharyngeal dimensions occurred in all groups (P < 0:001). Also, in groups I and III, the position of hyoid bone changed downwards and backwards, which was correlated with reduction in airway dimensions (r =0:4-0:6). Conclusion. According to the present results, extraction orthodontic treatment affects upper airway dimensions and hyoid bone position. Maximum anchorage decreases airway dimensions while moderate anchorage increases airway dimensions

Diet quality indices and gastrointestinal cancer risk:results from the Lifelines study

OBJECTIVE: To investigate the long-term association between four dietary quality indices and the risk of gastrointestinal (GI) cancer. METHODS: Baseline details of the dietary intake of participants, assessed by a single food frequency questionnaire from the prospective Lifelines population-based cohort were translated to diet quality scores using several dietary and dietary-lifestyle indices. Incident cases of GI cancer were then assessed by linkage to the Dutch nationwide histo-cytopathology registry. The association between GI cancer risk and diet quality (defined as higher quintiles on dietary indices compared to the first quintile) was assessed by multivariable Cox proportional hazard models. RESULTS: We included 72,695 participants aged 51.20 ± 8.71 years with a median follow-up to cancer diagnosis of 8 years (interquartile range 2 years). During follow-up, 434 colorectal cancers and 139 upper GI cancers were diagnosed. There was a significant reduction in colorectal cancer risk for high categories in the American Cancer Society (ACS) Index (hazard ratio 0.62; 95% CI 0.46–0.84). However, high dietary index scores were not associated with strong beneficial effects on upper GI cancer risk. CONCLUSION: High quintiles on the ACS Index were associated with a significantly reduced risk of colorectal cancer. This index may be of use in a colorectal cancer prevention program. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00394-021-02648-3

Assessment of Diet Quality and Adherence to Dietary Guidelines in Gastrointestinal Cancer Survivors:A Cross-Sectional Study

Diet quality among short- and long-term gastrointestinal (GI) cancer survivors with different tumor sites was investigated compared to a reference population cohort. Diet quality of GI cancer survivors (n = 307) was compared to an age- and sex-matched reference population with no history of cancer (n = 3070). All were selected from Lifelines, a population-based cohort. GI cancers were defined as having a history of cancer of the bowel, esophagus, or stomach. Diet quality was assessed by a self-administrated food frequency questionnaire in terms of: (i) Lifelines Diet (LLD) scores, where higher scores indicate higher diet quality; (ii) the adherence to dietary guidelines, quantified by the percentage of meeting dietary recommendations, as given by Dutch dietary guidelines; and (iii) the mean daily intake of food components. All analyses were adjusted for lifestyle factors. Diet scores in GI cancer survivors were not different from the reference population (OR = 0.97, 95% CI: 0.73-1.23). Stratification for time since diagnosis and tumor site gave similar results. The intake of vegetables, unsweetened dairies, and nuts and legumes was almost 50% lower than the recommended amount, and the mean intake of unhealthy food components was at least one serving/day among GI cancer survivors, as well as in the reference population. In the long run, GI cancer survivors do not differ from the reference population in their diet quality. In conclusion, both groups can improve their diet quality

Seawater reverse osmosis desalination and (harmful) algal blooms

Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of Elsevier for personal use, not for redistribution. The definitive version was published in Desalination 360 (2015): 61-80, doi:10.1016/j.desal.2015.01.007.This article reviews the occurrence of HABs in seawater, their effects on the operation of seawater reverse osmosis (SWRO) plants, the indicators for quantifying/predicting these effects, and the pretreatment strategies for mitigating operational issues during algal blooms. The potential issues in SWRO plants during HABs are particulate/organic fouling of pretreatment systems and biological fouling of RO membranes, mainly due to accumulation of algal organic matter (AOM). The presence of HAB toxins in desalinated water is also a potential concern but only at very low concentrations. Monitoring algal cell density, AOM concentrations and membrane fouling indices is a promising approach to assess the quality of SWRO feedwater and performance of the pretreatment system. When geological condition is favourable, subsurface intake can be a robust pretreatment for SWRO during HABs. Existing SWRO plants with open intake and are fitted with granular media filtration can improve performance in terms of capacity and product water quality, if preceded by dissolved air flotation or sedimentation. However, the application of advanced pretreatment using ultrafiltration membrane with in‐line coagulation is often a better option as it is capable of maintaining stable operation and better RO feed water quality during algal bloom periods with significantly lower chemical consumption.This study was conducted with the financial support of UNESCO‐IHE Institute for Water Education, Wetsus Centre of Excellence for Sustainable Water Technology and Water Desalination and Reuse Center (KAUST, Saudi Arabia). Support for D. M. Anderson was provided through the Woods Hole Center for Oceans and Human Health, National Science Foundation Grant OCE‐1314642 and National Institute of Environmental Health Sciences Grant 1‐P01‐ES021923‐01

Inter-area frequency control reserve assessment regarding dynamics of cascading outages and blackouts

The study of the dynamics taking place during power system blackouts is a subject that receives continuous attention in view of its inherent complexity and relevant consequences. Within this context, the paper aims at studying the role of the frequency control reserves (FCRs) on the cascading outages and the relevant short-term dynamics associated with the blackout mechanisms. The relationship between the large and small blackout frequency with respect to the value of FCRs is assessed. More in particular, the main contribution of this paper is to study the influence of the power system interconnections on its pre- and post-blackout behavior. For this investigation, a statistical procedure, based on the Monte Carlo simulation (MCS), is proposed. It performs a blackout risk analysis considering cascading outages as well as generators/loads response to the frequency deviation. The proposed procedure is then applied to the IEEE 118 bus system as an interconnected network characterized by three areas. The distributions and expected values of the blackout size are assessed for the whole system as well as for each area

Characterizing the universal rigidity of generic frameworks

A framework is a graph and a map from its vertices to E^d (for some d). A framework is universally rigid if any framework in any dimension with the same graph and edge lengths is a Euclidean image of it. We show that a generic universally rigid framework has a positive semi-definite stress matrix of maximal rank. Connelly showed that the existence of such a positive semi-definite stress matrix is sufficient for universal rigidity, so this provides a characterization of universal rigidity for generic frameworks. We also extend our argument to give a new result on the genericity of strict complementarity in semidefinite programming.Comment: 18 pages, v2: updates throughout; v3: published versio