Essential Fierz identities for a fermionic field

For a single fermionic field, an interpretation of the Fierz identities (which establish relations between the bilinear field observables) is given. They appear closely related to the algebraic class (regular or singular) of the spin 2-form $S$ associated to the spinor field. If $S \neq 0$, the Fierz identities follow from the 3+1 decomposition of the eigenvector equations for $S$ with respect to an inertial laboratory, which makes this interpretation suitable for fermionic particle physics models. When $S= 0$, the Fierz identities reduce to three constraints on the current densities associated with the spinor field, saying that they are orthogonal, equimodular, the vector current being timelike and the axial one being spacelike.Comment: 17 page

Options for basing Dietary Reference Intakes (DRIs) on chronic disease endpoints: report from a joint US-/Canadian-sponsored working group.

Dietary Reference Intakes (DRIs) are used in Canada and the United States in planning and assessing diets of apparently healthy individuals and population groups. The approaches used to establish DRIs on the basis of classical nutrient deficiencies and/or toxicities have worked well. However, it has proved to be more challenging to base DRI values on chronic disease endpoints; deviations from the traditional framework were often required, and in some cases, DRI values were not established for intakes that affected chronic disease outcomes despite evidence that supported a relation. The increasing proportions of elderly citizens, the growing prevalence of chronic diseases, and the persistently high prevalence of overweight and obesity, which predispose to chronic disease, highlight the importance of understanding the impact of nutrition on chronic disease prevention and control. A multidisciplinary working group sponsored by the Canadian and US government DRI steering committees met from November 2014 to April 2016 to identify options for addressing key scientific challenges encountered in the use of chronic disease endpoints to establish reference values. The working group focused on 3 key questions: 1) What are the important evidentiary challenges for selecting and using chronic disease endpoints in future DRI reviews, 2) what intake-response models can future DRI committees consider when using chronic disease endpoints, and 3) what are the arguments for and against continuing to include chronic disease endpoints in future DRI reviews? This report outlines the range of options identified by the working group for answering these key questions, as well as the strengths and weaknesses of each option

Developing a Model Framework for Predicting Effects of Woody Expansion and Fire on Ecosystem Carbon and Nitrogen in a Pinyon-Juniper Woodland

Sagebrush-steppe ecosystems are one of the most threatened ecosystems in North America due to woodland expansion, wildfire, and exotic annual grass invasion. Some scientists and policy makers have suggested that woodland expansion will lead to increased carbon (C) storage on the landscape. To assess this potential we used data collected from a Joint Fire Sciences Program demonstration area to develop a Microsoft Excel™ based biomass, carbon, and nitrogen (N) spreadsheet model. The model uses input for tree cover, soil chemistry, soil physical properties, and vegetation chemistry to estimate biomass, carbon, and nitrogen accumulation on the landscape with woodland expansion. The model also estimates C and N losses associated with prescribed burning. On our study plots we estimate in treeless sagebrush-steppe ecosystems, biomass accounts for 4.5 Mg ha−1 C and 0.3 Mg ha−1 N this is \u3c10% of total estimated ecosystem C and N to a soil depth of 53 cm, but as tree cover increases to near closed canopy conditions aboveground biomass may account for 62 Mg ha−1 C and 0.6 Mg ha−1 N which is nearly 53% of total estimated ecosystem C and 13% of total estimated ecosystem N to a soil depth of 53 cm. Prescribed burning removes aboveground biomass, C and N, but may increase soil C at areal tree cover below 26%. The model serves as a tool by which we are able to assess our understanding of the system and identify knowledge gaps which exist for this ecosystem. We believe that further work is necessary to quantify herbaceous biomass, root biomass, woody debris decomposition, and soil C and N with woodland expansion and prescribed fire. It will also be necessary to appropriately scale these estimates from the plot to the landscape

Influence of Prescribed Fire on Ecosystem Biomass, Carbon, and Nitrogen in a Pinyon Juniper Woodland

Increases in pinyon and juniper woodland cover associated with land-use history are suggested to provide offsets for carbon emissions in arid regions. However, the largest pools of carbon in arid landscapes are typically found in soils, and aboveground biomass cannot be considered long-term storage in fire-prone ecosystems. Also, the objectives of carbon storage may conflict with management for other ecosystem services and fuels reduction. Before appropriate decisions can be made it is necessary to understand the interactions between woodland expansion, management treatments, and carbon retention. We quantified effects of prescribed fire as a fuels reduction and ecosystem maintenance treatment on fuel loads, ecosystem carbon, and nitrogen in a pinyon–juniper woodland in the central Great Basin. We found that plots containing 30% tree cover averaged nearly 40 000 kg · ha−1 in total aboveground biomass, 80 000 kg · ha−1 in ecosystem carbon (C), and 5 000 kg · ha−1 in ecosystem nitrogen (N). Only 25% of ecosystem C and 5% of ecosystem N resided in aboveground biomass pools. Prescribed burning resulted in a 65% reduction in aboveground biomass, a 68% reduction in aboveground C, and a 78% reduction in aboveground N. No statistically significant change in soil or total ecosystem C or N occurred. Prescribed fire was effective at reducing fuels on the landscape and resulted in losses of C and N from aboveground biomass. However, the immediate and long-term effects of burning on soil and total ecosystem C and N is still unclear

Antiplasmodial activity, in vivo pharmacokinetics and anti-malarial efficacy evaluation of hydroxypyridinone hybrids in a mouse model

BackgroundDuring the erythrocytic stage in humans, malaria parasites digest haemoglobin of the host cell, and the toxic haem moiety crystallizes into haemozoin. Chloroquine acts by forming toxic complexes with haem molecules and interfering with their crystallization. In chloroquine-resistant strains, the drug is excluded from the site of action, which causes the parasites to accumulate less chloroquine in their acid food vacuoles than chloroquine-sensitive parasites. 3-Hydroxylpyridin-4-ones are known to chelate iron; hydroxypyridone-chloroquine (HPO-CQ) hybrids were synthesized in order to determine whether they can inhibit parasites proliferation in the parasitic digestive vacuole by withholding iron from plasmodial parasite metabolic pathway.MethodsTwo HPO-CQ hybrids were tested against Plasmodium falciparum chloroquine-sensitive (D10 and 3D7) and -resistant strains (Dd2 and K1). The pharmacokinetic properties of active compounds were determined using a mouse model and blood samples were collected at different time intervals and analysed using LC–MS/MS. For in vivo efficacy the mice were infected with Plasmodium berghei in a 4-day Peters’ test. The parasitaemia was determined from day 3 and the course of the infection was followed by microscopic examination of stained blood films every 2–3days until a rise in parasitaemia was observed in all test subjects.ResultsIC50 values of the two compounds for sensitive and resistant strains were 0.064 and 0.047µM (compound 1), 0.041 and 0.122µM (compound 2) and 0.505 and 0.463µM (compound 1), 0.089 and 0.076µM (compound 2), respectively. Pharmacokinetic evaluation of these compounds showed low oral bioavailability and this affected in vivo efficacy when compounds were dosed orally. However, when dosed intravenously compound 1 showed a clearance rate of 28ml/min/kg, an apparent volume of distribution of 20l/kg and a half-life of 4.3h. A reduction in parasitaemia was observed when compound 1 was dosed intravenously for four consecutive days in P. berghei-infected mice. However, a rise in parasitaemia levels was observed on day 6 and on day 9 for chloroquine-treated mice.ConclusionThe hybrid compounds that were tested were able to reduce parasitaemia levels in P. berghei-infected mice when dosed intravenously, but parasites recrudesced 24h after the administration of the least dose. Despite low oral bioavailability, the IV data obtained suggests that further structural modifications may lead to the identification of more HPO-CQ hybrids with improved pharmacokinetic properties and in vivo efficacy

A comprehensive study of GRB 070125, a most energetic gamma ray burst

We present a comprehensive multiwavelength analysis of the bright, long duration gamma-ray burst GRB 070125, comprised of observations in $\gamma$-ray, X-ray, optical, millimeter and centimeter wavebands. Simultaneous fits to the optical and X-ray light curves favor a break on day 3.78, which we interpret as the jet break from a collimated outflow. Independent fits to optical and X-ray bands give similar results in the optical bands but shift the jet break to around day 10 in the X-ray light curve. We show that for the physical parameters derived for GRB 070125, inverse Compton scattering effects are important throughout the afterglow evolution. While inverse Compton scattering does not affect radio and optical bands, it may be a promising candidate to delay the jet break in the X-ray band. Radio light curves show rapid flux variations, which are interpreted as due to interstellar scintillation, and are used to derive an upper limit of $2.4 \times 10^{17}$ cm on the radius of the fireball in the lateral expansion phase of the jet. Radio light curves and spectra suggest a high synchrotron self absorption frequency indicative of the afterglow shock wave moving in a dense medium. Our broadband modeling favors a constant density profile for the circumburst medium over a wind-like profile ($R^{-2}$). However, keeping in mind the uncertainty of the parameters, it is difficult to unambiguously distinguish between the two density profiles. Our broadband fits suggest that \event is a burst with high radiative efficiency ($> 60$).Comment: 50 pages, 33 figures, sty file included, Appeared in 20 Aug 2008 edition of Astrophysical Journa

EVLA Observations Constrain the Environment and Progenitor System of Type Ia Supernova 2011fe

We report unique EVLA observations of SN 2011fe representing the most sensitive radio study of a Type Ia supernova to date. Our data place direct constraints on the density of the surrounding medium at radii ~10^15-10^16 cm, implying an upper limit on the mass loss rate from the progenitor system of Mdot <~ 6 x 10^-10 Msol/yr (assuming a wind speed of 100 km/s), or expansion into a uniform medium with density n_CSM <~ 6 cm^-3. Drawing from the observed properties of non-conservative mass transfer among accreting white dwarfs, we use these limits on the density of the immediate environs to exclude a phase space of possible progenitors systems for SN 2011fe. We rule out a symbiotic progenitor system and also a system characterized by high accretion rate onto the white dwarf that is expected to give rise to optically-thick accretion winds. Assuming that a small fraction, 1%, of the mass accreted is lost from the progenitor system, we also eliminate much of the potential progenitor parameter space for white dwarfs hosting recurrent novae or undergoing stable nuclear burning. Therefore, we rule out the most popular single degenerate progenitor models for SN 2011fe, leaving a limited phase space inhabited by some double degenerate systems and exotic progenitor scenarios.Comment: Accepted to Ap

Mosaic BRAF fusions are a recurrent cause of congenital melanocytic naevi targetable by MEK inhibition

Among children with multiple congenital melanocytic naevi (CMN), 25% have no established genetic cause, of which many develop a hyperproliferative and severely pruritic phenotype resistant to treatment. Gene fusions have been reported in individual cases of CMN. Here, we study 169 CMN patients, 38 of whom were double wild-type for NRAS/BRAF mutations. Nineteen of these 38 patients had sufficient tissue to undergo RNAseq, which revealed mosaic BRAF fusions in 11/19 patients and mosaic RAF1 fusions in 1/19. Recurrently, fusions involved the loss of the 5’ regulatory domain of BRAF or RAF1 but preserved the kinase domain. We validated all cases and detected the fusions in two separate naevi in 5/12 patients, confirming clonality. The absence of the fusion in blood in 8/12 patients indicated mosaicism. Primary culture of BRAF-fusion naevus cells from 3/12 patients demonstrated highly increased MAPK activation, despite only mildly increased BRAF expression, suggesting additional mechanisms of kinase activation. Trametinib quenched MAPK hyperactivation in vitro and treatment of two patients caused rapid improvement in bulk tissue, improving bodily movement, and reducing inflammation and severe pruritus. These findings offer a genetic diagnosis to an additional group of patients and trametinib as a treatment option for the severe associated phenotypes

A Complete Survey of the Transient Radio Sky and Implications for Gamma-Ray Bursts, Supernovae, and other Relativistic Explosions

We had previously reported on a survey for radio transients, used to set an upper limit on the number of orphan gamma-ray burst (GRB) radio afterglows, and thus a lower limit on the typical GRB beaming factor. Here we report radio and optical follow-up observations of these possible transients, achieving the first full characterization of the transient radio sky. We find that only two source are likely to be real radio transients, an optically obscured radio supernova (SN) in the nearby galaxy NGC 4216, and a source not associated with a bright host galaxy, which is too radio luminous to be a GRB afterglow. We speculate that this may be a flare from a peculiar active galactic nucleus, or a burst from an unusual Galactic compact object. We place an upper limit of 65 radio transients above 6 mJy over the entire sky at the 95% confidence level. The implications are as follows. First, we derive a limit on the typical beaming of GRBs; we find f_b^{-1} >~ 60, ~5 times higher than our earlier results. Second, we impose an upper limit on the rate of events that eject >~ 10^{51} erg in unconfined relativistic ejecta, whether or not accompanied by detectable emission in wavebands other than the radio. Our estimated rate, <=1000/y/Gpc, is about two orders of magnitude smaller than the rate of core-collapse SNe (and type Ib/c events in particular), indicating that only a minority of such events eject significant amounts of relativistic material, which are required by fireball models of long-soft GRBs. Finally, we show that future wider and/or deeper radio variability surveys are expected to detect numerous orphan radio GRB afterglows. Our survey also illustrates the great potential of sensitive surveys with new instruments to revolutionize the study of nearby SNe (abridged).Comment: Submitted to ApJ. Comments welcom