Early Life Relict Feature in Peptide Mass Distribution

Molecular mass of a biomolecule is characterized in mass spectroscopy by the monoisitopic mass M~mono~ and the average isotopic mass M~av~. We found that peptide masses mapped on a plane made by two parameters derived from M~mono~ and M~av~ form a peculiar global feature in form of a band-gap 5-7 ppm wide stretching across the whole peptide galaxy, with a narrow (FWHM 0.2 ppm) line in the centre. The a priori probability of such a feature to emerge by chance is less than 1:100. Peptides contributing to the central line have elemental compositions following the rules S=0; Z = (2C - N - H)/2 =0, which nine out of 20 amino acid residues satisfy. The relative abundances of amino acids in the peptides contributing to the central line correlate with the consensus order of emergence of these amino acids, with ancient amino acids being overrepresented in on-line peptides. Thus the central line is a relic of ancient life, and likely a signature of its emergence in abiotic synthesis. The linear correlation between M~av~ and M~mono~ reduces the complexity of polypeptide molecules, which may have increased the rate of their abiotic production. This, in turn may have influenced the selection of these amino acid residues for terrestrial life. Assuming the line feature is not spurious, life has emerged from elements with isotopic abundances very close to terrestrial levels, which rules out most of the Galaxy

Hydrodynamic Modes in a Trapped Strongly Interacting Fermi Gases of Atoms

The zero-temperature properties of a dilute two-component Fermi gas in the BCS-BEC crossover are investigated. On the basis of a generalization of the variational Schwinger method, we construct approximate semi-analytical formulae for collective frequencies of the radial and the axial breathing modes of the Fermi gas under harmonic confinement in the framework of the hydrodynamic theory. It is shown that the method gives nearly exact solutions.Comment: 11 page

Collective Excitations of Strongly Interacting Fermi Gases of Atoms in a Harmonic Trap

The zero-temperature properties of a dilute two-component Fermi gas in the BCS-BEC crossover are investigated. On the basis of a generalization of the Hylleraas-Undheim method, we construct rigorous upper bounds to the collective frequencies for the radial and the axial breathing mode of the Fermi gas under harmonic confinement in the framework of the hydrodynamic theory. The bounds are compared to experimental data for trapped vapors of Li6 atoms.Comment: 11 pages, 2 figure

Time-Dependent Density-Functional Theory for Trapped Strongly-Interacting Fermionic Atoms

The dynamics of strongly interacting trapped dilute Fermi gases (dilute in the sense that the range of interatomic potential is small compared with inter-particle spacing) is investigated in a single-equation approach to the time-dependent density-functional theory. Our results are in good agreement with recent experimental data in the BCS-BEC crossover regime. It is also shown that the calculated corrections to the hydrodynamic approximation may be important even for systems with a rather large number of atoms.Comment: Resubmitted to PRA in response to referee's comments. Abstract is changed. Added new figure

Site-site memory equation approach in study of density/pressure dependence of translational diffusion coefficient and rotational relaxation time of polar molecular solutions: acetonitrile in water, methanol in water, and methanol in acetonitrile

We present results of theoretical study and numerical calculation of the dynamics of molecular liquids based on combination of the memory equation formalism and the reference interaction site model - RISM. Memory equations for the site-site intermediate scattering functions are studied in the mode-coupling approximation for the first order memory kernels, while equilibrium properties such as site-site static structure factors are deduced from RISM. The results include the temperature-density(pressure) dependence of translational diffusion coefficients D and orientational relaxation times t for acetonitrile in water, methanol in water and methanol in acetonitrile, all in the limit of infinite dilution. Calculations are performed over the range of temperatures and densities employing the SPC/E model for water and optimized site-site potentials for acetonitrile and methanol. The theory is able to reproduce qualitatively all main features of temperature and density dependences of D and t observed in real and computer experiments. In particular, anomalous behavior, i.e. the increase in mobility with density, is observed for D and t of methanol in water, while acetonitrile in water and methanol in acetonitrile do not show deviations from the ordinary behavior. The variety exhibited by the different solute-solvent systems in the density dependence of the mobility is interpreted in terms of the two competing origins of friction, which interplay with each other as density increases: the collisional and dielectric frictions which, respectively, increase and decrease with increasing density.Comment: 13 pages, 8 eps-figures, 3 tables, RevTeX4-forma

Ground-State of Charged Bosons Confined in a Harmonic Trap

We study a system composed of N identical charged bosons confined in a harmonic trap. Upper and lower energy bounds are given. It is shown in the large N limit that the ground-state energy is determined within an accuracy of $\pm 8$ and that the mean field theory provides a reasonable result with relative error of less than 16% for the binding energy .Comment: 15 page

The Hilbert-Schmidt Theorem Formulation of the R-Matrix Theory

Using the Hilbert-Schmidt theorem, we reformulate the R-matrix theory in terms of a uniformly and absolutely convergent expansion. Term by term differentiation is possible with this expansion in the neighborhood of the surface. Methods for improving the convergence are discussed when the R-function series is truncated for practical applications.Comment: 16 pages, Late

Some aspects of the mm-adic analysis and its applications to mm-adic stochastic processes

In this paper we consider a generalization of analysis on $p$-adic numbers field to the $m$ case of $m$-adic numbers ring. The basic statements, theorems and formulas of $p$-adic analysis can be used for the case of $m$-adic analysis without changing. We discuss basic properties of $m$-adic numbers and consider some properties of $m$-adic integration and $m$-adic Fourier analysis. The class of infinitely divisible $m$-adic distributions and the class of $m$-adic stochastic Levi processes were introduced. The special class of $m$-adic CTRW process and fractional-time $m$-adic random walk as the diffusive limit of it is considered. We found the asymptotic behavior of the probability measure of initial distribution support for fractional-time $m$-adic random walk.Comment: 18 page

Soft and non-soft structural transitions in disordered nematic networks

Properties of disordered nematic elastomers and gels are theoretically investigated with emphasis on the roles of non-local elastic interactions and crosslinking conditions. Networks originally crosslinked in the isotropic phase lose their long-range orientational order by the action of quenched random stresses, which we incorporate into the affine-deformation model of nematic rubber elasticity. We present a detailed picture of mechanical quasi-Goldstone modes, which accounts for an almost completely soft polydomain-monodomain (P-M) transition under strain as well as a ``four-leaf clover'' pattern in depolarized light scattering intensity. Dynamical relaxation of the domain structure is studied using a simple model. The peak wavenumber of the structure factor obeys a power-law-type slow kinetics and goes to zero in true mechanical equilibrium. The effect of quenched disorder on director fluctuation in the monodomain state is analyzed. The random frozen contribution to the fluctuation amplitude dominates the thermal one, at long wavelengths and near the P-M transition threshold. We also study networks obtained by crosslinking polydomain nematic polymer melts. The memory of initial director configuration acts as correlated and strong quenched disorder, which renders the P-M transition non-soft. The spatial distribution of the elastic free energy is strongly dehomogenized by external strain, in contrast to the case of isotropically crosslinked networks.Comment: 19 pages, 15 EPS figure