Continuity and Change in Howard S. Becker's work: An Interview with Howard S. Becker

Howard S. Becker is one of the foremost sociologists of the second half of the twentieth century. Although he is perhaps best known for research on deviance and his book Outsiders, this constitutes only a very small fraction of his earliest work. This interview looks at some of the continuities and cores of his work over ?fifty years. Becker highlights how his work maintains the same core concerns, although new interests have been added over time. At the core is a concern with 'work' and 'doing things together.' Becker provides many concrete stories from the past and also raises issues about the nature of doing theory and research, how he writes and produces his studies, and the problems attached to the professionalization of sociology. His writing on art and culture can be seen as assuming a major position in his later work, but he does not identify with either postmodernism or cultural studies

The 2006 NESCent Phyloinformatics Hackathon: A Field Report

In December, 2006, a group of 26 software developers from some of the most widely used life science programming toolkits and phylogenetic software projects converged on Durham, North Carolina, for a Phyloinformatics Hackathon, an intense five-day collaborative software coding event sponsored by the National Evolutionary Synthesis Center (NESCent). The goal was to help researchers to integrate multiple phylogenetic software tools into automated workflows. Participants addressed deficiencies in interoperability between programs by implementing “glue code” and improving support for phylogenetic data exchange standards (particularly NEXUS) across the toolkits. The work was guided by use-cases compiled in advance by both developers and users, and the code was documented as it was developed. The resulting software is freely available for both users and developers through incorporation into the distributions of several widely-used open-source toolkits. We explain the motivation for the hackathon, how it was organized, and discuss some of the outcomes and lessons learned. We conclude that hackathons are an effective mode of solving problems in software interoperability and usability, and are underutilized in scientific software development

Discovery of High-Affinity Protein Binding Ligands – Backwards

BACKGROUND: There is a pressing need for high-affinity protein binding ligands for all proteins in the human and other proteomes. Numerous groups are working to develop protein binding ligands but most approaches develop ligands using the same strategy in which a large library of structured ligands is screened against a protein target to identify a high-affinity ligand for the target. While this methodology generates high-affinity ligands for the target, it is generally an iterative process that can be difficult to adapt for the generation of ligands for large numbers of proteins. METHODOLOGY/PRINCIPAL FINDINGS: We have developed a class of peptide-based protein ligands, called synbodies, which allow this process to be run backwards--i.e. make a synbody and then screen it against a library of proteins to discover the target. By screening a synbody against an array of 8,000 human proteins, we can identify which protein in the library binds the synbody with high affinity. We used this method to develop a high-affinity synbody that specifically binds AKT1 with a K(d)<5 nM. It was found that the peptides that compose the synbody bind AKT1 with low micromolar affinity, implying that the affinity and specificity is a product of the bivalent interaction of the synbody with AKT1. We developed a synbody for another protein, ABL1 using the same method. CONCLUSIONS/SIGNIFICANCE: This method delivered a high-affinity ligand for a target protein in a single discovery step. This is in contrast to other techniques that require subsequent rounds of mutational improvement to yield nanomolar ligands. As this technique is easily scalable, we believe that it could be possible to develop ligands to all the proteins in any proteome using this approach

The 2006 NESCent Phyloinformatics Hackathon: A Field Report

In December, 2006, a group of 26 software developers from some of the most widely used life science programming toolkits and phylogenetic software projects converged on Durham, North Carolina, for a Phyloinformatics Hackathon, an intense five-day collaborative software coding event sponsored by the National Evolutionary Synthesis Center (NESCent). The goal was to help researchers to integrate multiple phylogenetic software tools into automated workflows. Participants addressed deficiencies in interoperability between programs by implementing “glue code” and improving support for phylogenetic data exchange standards (particularly NEXUS) across the toolkits. The work was guided by use-cases compiled in advance by both developers and users, and the code was documented as it was developed. The resulting software is freely available for both users and developers through incorporation into the distributions of several widely-used open-source toolkits. We explain the motivation for the hackathon, how it was organized, and discuss some of the outcomes and lessons learned. We conclude that hackathons are an effective mode of solving problems in software interoperability and usability, and are underutilized in scientific software development

The genetic architecture of the human cerebral cortex

The cerebral cortex underlies our complex cognitive capabilities, yet little is known about the specific genetic loci that influence human cortical structure. To identify genetic variants that affect cortical structure, we conducted a genome-wide association meta-analysis of brain magnetic resonance imaging data from 51,665 individuals. We analyzed the surface area and average thickness of the whole cortex and 34 regions with known functional specializations. We identified 199 significant loci and found significant enrichment for loci influencing total surface area within regulatory elements that are active during prenatal cortical development, supporting the radial unit hypothesis. Loci that affect regional surface area cluster near genes in Wnt signaling pathways, which influence progenitor expansion and areal identity. Variation in cortical structure is genetically correlated with cognitive function, Parkinson's disease, insomnia, depression, neuroticism, and attention deficit hyperactivity disorder

Aspects de la théorie du contraste. Applications à l'étude des défauts cristallins à deux dimensions. I. - Cristal parfait

info:eu-repo/semantics/publishe

Experiments in free fall

A model lift containing a figure of Albert Einstein is released from the side of a tall building and its free fall is arrested by elastic ropes. This arrangement allows four simple experiments to be conducted in the lift to demonstrate the effects of free fall and show how they can lead to the concept of the equivalence of inertial and gravitational masses. © 2006 IOP Publishing Ltd.SCOPUS: ar.jinfo:eu-repo/semantics/publishe

Fautes d'empilement dans les cristaux de structure cubique à faces centrées: étude faite par microscopie et diffraction électroniques

Doctorat en Sciencesinfo:eu-repo/semantics/nonPublishe

Macles de croissance dans les cristaux d'argent des couches minces

Very often, striations appear on electron-microscope pictures of crystals of silver thin layers. According to Ogawa and collaborators, these striations are due to twinned crystals in these thin layers. This assumption is confirmed by the present article. We show moreover that when there is " epitaxy " of silver on sodium chloride, the striations have a general orientation with respect to the crystallographic axes of the supporting material.Les images données par le microscope électronique de cristaux de couches minces d'argent présentent souvent des stries qui ont été attribuées par Ogawa et ses collaborateurs à la présence de macles dans ces couches minces. Le présent article apporte une confirmation de cette hypothèse et montre en outre que s'il y a épitaxie de l'argent sur le chlorure de sodium, des stries ont une orientation d'ensemble par rapport aux axes cristallographiques du support