Analysis of nickel concentration profiles around the roots of the hyperaccumulator plant Berkheya coddii using MRI and numerical simulations

Abstract Investigations of soil-root interactions are hampered by the difficult experimental accessibility of the rhizosphere. Here we show the potential of Magnetic Resonance Imaging (MRI) as a non-destructive measurement technique in combination with numerical modelling to study the dynamics of the spatial distribution of dissolved nickel (Ni2+) around the roots of the nickel hyperaccumulator plant Berkheya coddii. Special rhizoboxes were used in which a root monolayer had been grown, separated from an adjacent inert glass bead packing by a nylon membrane. After applying a Ni2+ solution of 10 mg l−1, the rhizobox was imaged repeatedly using MRI. The obtained temporal sequence of 2-dimensional Ni2+ maps in the vicinity of the roots showed that Ni2+ concentrations increased towards the root plane, revealing an accumulation pattern. Numerical modelling supported the Ni2+ distributions to result from advective water flow towards the root plane, driven by transpiration, and diffusion of Ni2+ tending to eliminate the concentration gradient. With the model, we could study how the accumulation pattern of Ni2+ in the root zone transforms into a depletion pattern depending on transpiration rate, solute uptake rate, and Ni2+ concentration in solution

Abundance of denitrification genes under different peizometer depths in four Irish agricultural groundwater sites

This study examined the relationship between the abundance of bacterial denitrifiers in groundwater at four sites, differing with respect to overlaying land management and peizometer depth. Groundwater was sourced from 36 multilevel piezometers, which were installed to target different groundwater zones: (1) subsoil, (2) subsoil to bedrock interface, and (3) bedrock. The gene copy concentrations (GCCs), as gene copies per liter, for bacterial 16S rRNA genes and the denitrifying functional genes, nirK, nirS, and nosZ, were determined using quantitative polymerase chain reaction assays. The results were related to gaseous nitrogen emissions and to the physicochemical properties of the four sites. Overall, nirK and nirS abundance appeared to show no significant correlation to N2O production (P = 0.9989; P = 0.3188); and no significant correlation was observed between nosZ and excess N2 concentrations (P = 0.0793). In the majority of piezometers investigated, the variation of nirK and nirS gene copy concentrations was considered significant (P < 0.0001). Dissolved organic carbon (DOC) decreased with aquifer depth and ranged from 1.0-4.0 mg l-1, 0.9-2.4 mg l-1, and 0.8-2.4 mg l-1 within piezometers located in the subsoil, subsoil/bedrock interface, and bedrock depths, respectively. The availability of increasing DOC and the depth of the water table were positively correlated with increasing nir and nosZ GCCs (P = 0.0012). A significant temporal correlation was noted between nirS and piezometer depth (P < 0.001). Interestingly, the nirK, nirS, and nosZ GCCs varied between piezometer depths within specific sites, while GCCs remained relatively constant from site to site, thus indicating no direct impact of agricultural land management strategies investigated on denitrifier abundance.close