Self-organized dynamics and the transition to turbulence of confined active nematics

We study how confinement transforms the chaotic dynamics of bulk microtubule-based active nematics into regular spatiotemporal patterns. For weak confinements, multiple continuously nucleating and annihilating topological defects self-organize into persistent circular flows of either handedness. Increasing confinement strength leads to the emergence of distinct dynamics, in which the slow periodic nucleation of topological defects at the boundary is superimposed onto a fast procession of a pair of defects. A defect pair migrates towards the confinement core over multiple rotation cycles, while the associated nematic director field evolves from a distinct double spiral towards a nearly circularly symmetric configuration. The collapse of the defect orbits is punctuated by another boundary-localized nucleation event, that sets up long-term doubly-periodic dynamics. Comparing experimental data to a theoretical model of an active nematic, reveals that theory captures the fast procession of a pair of $+\frac{1}{2}$ defects, but not the slow spiral transformation nor the periodic nucleation of defect pairs. Theory also fails to predict the emergence of circular flows in the weak confinement regime. The developed confinement methods are generalized to more complex geometries, providing a robust microfluidic platform for rationally engineering two-dimensional autonomous flows

Three-dimensional fluid motion in Faraday waves: creation of vorticity and generation of two-dimensional turbulence

We study the generation of 2D turbulence in Faraday waves by investigating the creation of spatially periodic vortices in this system. Measurements which couple a diffusing light imaging technique and particle tracking algorithms allow the simultaneous observation of the three-dimensional fluid motion and of the temporal changes in the wave field topography. Quasi-standing waves are found to coexist with a spatially extended fluid transport. More specifically, the destruction of regular patterns of oscillons coincides with the emergence of a complex fluid motion whose statistics are similar to that of two-dimensional turbulence. We reveal that a lattice of oscillons generates vorticity at the oscillon scale in the horizontal flow. The interaction of these vortices explain how 2D turbulence is fueled by almost standing waves. Remarkably, the curvature of Lagrangian trajectories reveals a "footprint" of the forcing scale vortices in fully developed turbulence. 2D Navier-Stokes turbulence should be considered a source of disorder in Faraday waves. These findings also provide a new paradigm for vorticity creation in 2D flows

Field-control, phase-transitions, and life's emergence

Instances of critical-like characteristics in living systems at each organizational level as well as the spontaneous emergence of computation (Langton), indicate the relevance of self-organized criticality (SOC). But extrapolating complex bio-systems to life's origins, brings up a paradox: how could simple organics--lacking the 'soft matter' response properties of today's bio-molecules--have dissipated energy from primordial reactions in a controlled manner for their 'ordering'? Nevertheless, a causal link of life's macroscopic irreversible dynamics to the microscopic reversible laws of statistical mechanics is indicated via the 'functional-takeover' of a soft magnetic scaffold by organics (c.f. Cairns-Smith's 'crystal-scaffold'). A field-controlled structure offers a mechanism for bootstrapping--bottom-up assembly with top-down control: its super-paramagnetic components obey reversible dynamics, but its dissipation of H-field energy for aggregation breaks time-reversal symmetry. The responsive adjustments of the controlled (host) mineral system to environmental changes would bring about mutual coupling between random organic sets supported by it; here the generation of long-range correlations within organic (guest) networks could include SOC-like mechanisms. And, such cooperative adjustments enable the selection of the functional configuration by altering the inorganic network's capacity to assist a spontaneous process. A non-equilibrium dynamics could now drive the kinetically-oriented system towards a series of phase-transitions with appropriate organic replacements 'taking-over' its functions.Comment: 54 pages, pdf fil

The statistical physics of active matter: from self-catalytic colloids to living cells

These lecture notes are designed to provide a brief introduction into the phenomenology of active matter and to present some of the analytical tools used to rationalize the emergent behavior of active systems. Such systems are made of interacting agents able to extract energy stored in the environment to produce sustained directed motion. The local conversion of energy into mechanical work drives the system far from equilibrium, yielding new dynamics and phases. The emerging phenomena can be classified depending on the symmetry of the active particles and on the type of microscopic interactions. We focus here on steric and aligning interactions, as well as interactions driven by shape changes. The models that we present are all inspired by experimental realizations of either synthetic, biomimetic or living systems. Based on minimal ingredients, they are meant to bring a simple and synthetic understanding of the complex phenomenology of active matter.Comment: Lecture notes for the international summer school "Fundamental Problems in Statistical Physics" 2017 in Brunec

Lamellar ordering, droplet formation and phase inversion in exotic active emulsions

We study numerically the behaviour of a mixture of a passive isotropic fluid and an active polar gel, in the presence of a surfactant favouring emulsification. Focussing on parameters for which the underlying free energy favours the lamellar phase in the passive limit, we show that the interplay between nonequilibrium and thermodynamic forces creates a range of multifarious exotic emulsions. When the active component is contractile (e.g., an actomyosin solution), moderate activity enhances the efficiency of lamellar ordering, whereas strong activity favours the creation of passive droplets within an active matrix. For extensile activity (occurring, e.g., in microtubule-motor suspensions), instead, we observe an emulsion of spontaneously rotating droplets of different size. By tuning the overall composition, we can create high internal phase emulsions, which undergo sudden phase inversion when activity is switched off. Therefore, we find that activity provides a single control parameter to design composite materials with a strikingly rich range of morphologies.Comment: 15 pages: Manuscprit (4 figures) and SI (11 figures

Scaling behavior in interacting systems: joint effect of anisotropy and compressibility

Motivated by the ubiquity of turbulent flows in realistic conditions, effects of turbulent advection on two models of classical non-linear systems are investigated. In particular, we analyze model A (according to the Hohenberg-Halperin classification [1]) of a non-conserved order parameter and a model of the direct bond percolation process. Having two paradigmatic representatives of distinct stochastic dynamics, our aim is to elucidate to what extent velocity fluctuations affect their scaling behavior. The main emphasis is put on an interplay between anisotropy and compressibility of the velocity flow on their respective scaling regimes. Velocity fluctuations are generated by means of the Kraichnan rapid-change model, in which the anisotropy is due to a distinguished spatial direction n and a correlator of the velocity field obeys the Gaussian distribution law with prescribed statistical properties. As the main theoretical tool, the field-theoretic perturbative renormalization group is adopted. Actual calculations are performed in the leading (one-loop) approximation. Having obtained infra-red stable asymptotic regimes, we have found four possible candidates for macroscopically observable behavior for each model. In contrast to the isotropic case, anisotropy brings about enhancement of non-linearities and non-trivial regimes are proved to be more stable