Development and characterization of a laser-induced acoustic desorption source

A laser-induced acoustic desorption source, developed for use at central facilities, such as free-electron lasers, is presented. It features prolonged measurement times and a fixed interaction point. A novel sample deposition method using aerosol spraying provides a uniform sample coverage and hence stable signal intensity. Utilizing strong-field ionization as a universal detection scheme, the produced molecular plume is characterized in terms of number density, spatial extend, fragmentation, temporal distribution, translational velocity, and translational temperature. The effect of desorption laser intensity on these plume properties is evaluated. While translational velocity is invariant for different desorption laser intensities, pointing to a non-thermal desorption mechanism, the translational temperature increases significantly and higher fragmentation is observed with increased desorption laser fluence.Comment: 8 pages, 7 figure

Parametrization of translational surfaces

The algebraic translational surface is a typical modeling surface in computer aided design and architecture industry. In this paper, we give a necessary and sufficient condition for that algebraic surface having a standard parametric representation and our proof is constructive. If the given algebraic surface is translational, then we can compute a standard parametric representation for the surface

Spectral Difference Equations Satisfied by KP Soliton Wavefunctions

The Baker-Akhiezer (wave) functions corresponding to soliton solutions of the KP hierarchy are shown to satisfy eigenvalue equations for a commutative ring of translational operators in the spectral parameter. In the rational limit, these translational operators converge to the differential operators in the spectral parameter previously discussed as part of the theory of "bispectrality". Consequently, these translational operators can be seen as demonstrating a form of bispectrality for the non-rational solitons as well.Comment: to appear in "Inverse Problems

Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea : research article

Background Differential expression of genes can be regulated on many different levels. Most global studies of gene regulation concentrate on transcript level regulation, and very few global analyses of differential translational efficiencies exist. The studies have revealed that in Saccharomyces cerevisiae, Arabidopsis thaliana, and human cell lines translational regulation plays a significant role. Additional species have not been investigated yet. Particularly, until now no global study of translational control with any prokaryotic species was available. Results A global analysis of translational control was performed with two haloarchaeal model species, Halobacterium salinarum and Haloferax volcanii. To identify differentially regulated genes, exponentially growing and stationary phase cells were compared. More than 20% of H. salinarum transcripts are translated with non-average efficiencies. By far the largest group is comprised of genes that are translated with above-average efficiency specifically in exponential phase, including genes for many ribosomal proteins, RNA polymerase subunits, enzymes, and chemotaxis proteins. Translation of 1% of all genes is specifically repressed in either of the two growth phases. For comparison, DNA microarrays were also used to identify differential transcriptional regulation in H. salinarum, and 17% of all genes were found to have non-average transcript levels in exponential versus stationary phase. In H. volcanii, 12% of all genes are translated with non-average efficiencies. The overlap with H. salinarum is negligible. In contrast to H. salinarum, 4.6% of genes have non-average translational efficiency in both growth phases, and thus they might be regulated by other stimuli than growth phase. Conclusions For the first time in any prokaryotic species it was shown that a significant fraction of genes is under differential translational control. Groups of genes with different regulatory patterns were discovered. However, neither the fractions nor the identity of regulated genes are conserved between H. salinarum and H. volcanii, indicating that prokaryotes as well as eukaryotes use differential translational control for the regulation of gene expression, but that the identity of regulated genes is not conserved For 70 H. salinarum genes potentiation of regulation was observed, but for the majority of regulated genes either transcriptional or translational regulation is employed

Energy dissipation and scattering angle distribution analysis of the classical trajectory calculations of methane scattering from a Ni(111) surface

We present classical trajectory calculations of the rotational vibrational scattering of a non-rigid methane molecule from a Ni(111) surface. Energy dissipation and scattering angles have been studied as a function of the translational kinetic energy, the incidence angle, the (rotational) nozzle temperature, and the surface temperature. Scattering angles are somewhat towards the surface for the incidence angles of 30, 45, and 60 degree at a translational energy of 96 kJ/mol. Energy loss is primarily from the normal component of the translational energy. It is transfered for somewhat more than half to the surface and the rest is transfered mostly to rotational motion. The spread in the change of translational energy has a basis in the spread of the transfer to rotational energy, and can be enhanced by raising of the surface temperature through the transfer process to the surface motion.Comment: 8 pages REVTeX, 5 figures (eps

Dual-topology insertion of a dual-topology membrane protein.

Some membrane transporters are dual-topology dimers in which the subunits have inverted transmembrane topology. How a cell manages to generate equal populations of two opposite topologies from the same polypeptide chain remains unclear. For the dual-topology transporter EmrE, the evidence to date remains consistent with two extreme models. A post-translational model posits that topology remains malleable after synthesis and becomes fixed once the dimer forms. A second, co-translational model, posits that the protein inserts in both topologies in equal proportions. Here we show that while there is at least some limited topological malleability, the co-translational model likely dominates under normal circumstances

Achieving translational symmetry in trapped cold ion rings

Spontaneous symmetry breaking is a universal concept throughout science. For instance, the Landau-Ginzburg paradigm of translational symmetry breaking underlies the classification of nearly all quantum phases of matter and explains the emergence of crystals, insulators, and superconductors. Usually, the consequences of translational invariance are studied in large systems to suppress edge effects which cause undesired symmetry breaking. While this approach works for investigating global properties, studies of local observables and their correlations require access and control of the individual constituents. Periodic boundary conditions, on the other hand, could allow for translational symmetry in small systems where single particle control is achievable. Here, we crystallize up to fifteen 40Ca+ ions in a microscopic ring with inherent periodic boundary conditions. We show the ring's translational symmetry is preserved at millikelvin temperatures by delocalizing the Doppler laser cooled ions. This establishes an upper bound for undesired symmetry breaking at a level where quantum control becomes feasible. These findings pave the way towards studying quantum many-body physics with translational symmetry at the single particle level in a variety of disciplines from simulation of Hawking radiation to exploration of quantum phase transitions.Comment: 15 pages, 4 figure

Improving translational studies: lessons from rare neuromuscular diseases

Animal models play a key role in the development of novel treatments for human disease. This is particularly true for rare diseases – defined as disorders that affect less than 1 in 2000 people in the human population – for which, very often, there are no effective methods of treatment. Pharmaceutical companies are increasingly focussing on the development of therapies for the more than 7000 rare diseases. Because the majority of these are the result of single gene disorders, the exceptional ability to manipulate the mouse genome means that many such studies will take place in the laboratory mouse. But how good are the mouse models and how useful are they in assessing the potential for translational medicine? In this Editorial, I will discuss current difficulties in translational research as well as examples of good laboratory practice and guidelines that are being implemented to improve the translational potential of animal studies in the field of neuromuscular rare diseases. This could represent a potentially useful approach for adoption by other disease fields to achieve a greater success rate in translational studies