06472 Abstracts Collection - XQuery Implementation Paradigms

From 19.11.2006 to 22.11.2006, the Dagstuhl Seminar 06472 ``XQuery Implementation Paradigms'' was held in the International Conference and Research Center (IBFI), Schloss Dagstuhl. During the seminar, several participants presented their current research, and ongoing work and open problems were discussed. Abstracts of the presentations given during the seminar as well as abstracts of seminar results and ideas are put together in this paper. The first section describes the seminar topics and goals in general. Links to extended abstracts or full papers are provided, if available

Simulation of networks of spiking neurons: A review of tools and strategies

We review different aspects of the simulation of spiking neural networks. We start by reviewing the different types of simulation strategies and algorithms that are currently implemented. We next review the precision of those simulation strategies, in particular in cases where plasticity depends on the exact timing of the spikes. We overview different simulators and simulation environments presently available (restricted to those freely available, open source and documented). For each simulation tool, its advantages and pitfalls are reviewed, with an aim to allow the reader to identify which simulator is appropriate for a given task. Finally, we provide a series of benchmark simulations of different types of networks of spiking neurons, including Hodgkin-Huxley type, integrate-and-fire models, interacting with current-based or conductance-based synapses, using clock-driven or event-driven integration strategies. The same set of models are implemented on the different simulators, and the codes are made available. The ultimate goal of this review is to provide a resource to facilitate identifying the appropriate integration strategy and simulation tool to use for a given modeling problem related to spiking neural networks.Comment: 49 pages, 24 figures, 1 table; review article, Journal of Computational Neuroscience, in press (2007

KInNeSS: A Modular Framework for Computational Neuroscience

Making use of very detailed neurophysiological, anatomical, and behavioral data to build biological-realistic computational models of animal behavior is often a difficult task. Until recently, many software packages have tried to resolve this mismatched granularity with different approaches. This paper presents KInNeSS, the KDE Integrated NeuroSimulation Software environment, as an alternative solution to bridge the gap between data and model behavior. This open source neural simulation software package provides an expandable framework incorporating features such as ease of use, scalabiltiy, an XML based schema, and multiple levels of granularity within a modern object oriented programming design. KInNeSS is best suited to simulate networks of hundreds to thousands of branched multu-compartmental neurons with biophysical properties such as membrane potential, voltage-gated and ligand-gated channels, the presence of gap junctions of ionic diffusion, neuromodulation channel gating, the mechanism for habituative or depressive synapses, axonal delays, and synaptic plasticity. KInNeSS outputs include compartment membrane voltage, spikes, local-field potentials, and current source densities, as well as visualization of the behavior of a simulated agent. An explanation of the modeling philosophy and plug-in development is also presented. Further developement of KInNeSS is ongoing with the ultimate goal of creating a modular framework that will help researchers across different disciplines to effecitively collaborate using a modern neural simulation platform.Center for Excellence for Learning Education, Science, and Technology (SBE-0354378); Air Force Office of Scientific Research (F49620-01-1-0397); Office of Naval Research (N00014-01-1-0624

A pragmatic approach to semantic repositories benchmarking

The aim of this paper is to benchmark various semantic repositories in order to evaluate their deployment in a commercial image retrieval and browsing application. We adopt a two-phase approach for evaluating the target semantic repositories: analytical parameters such as query language and reasoning support are used to select the pool of the target repositories, and practical parameters such as load and query response times are used to select the best match to application requirements. In addition to utilising a widely accepted benchmark for OWL repositories (UOBM), we also use a real-life dataset from the target application, which provides us with the opportunity of consolidating our findings. A distinctive advantage of this benchmarking study is that the essential requirements for the target system such as the semantic expressivity and data scalability are clearly defined, which allows us to claim contribution to the benchmarking methodology for this class of applications

The XML benchmark project

With standardization efforts of a query language for XML documents drawing to a close, researchers and users increasingly focus their attention on the database technology that has to deliver on the new challenges that the sheer amount of XML documents produced by applications pose to data management: validation, performance evaluation and optimization of XML query processors are the upcoming issues. Following a long tradition in database research, the XML Store Benchmark Project provides a framework to assess an XML database's abilities to cope with a broad spectrum of different queries, typically posed in real-world application scenarios. The benchmark is intended to help both implementors and users to compare XML databases independent of their own, specific application scenario. To this end, the benchmark offers a set queries each of which is intended to challenge a particular primitive of the query processor or storage engine. The overall workload we propose consists of a scalable document database and a concise, yet comprehensive set of queries, which covers the major aspects of query processing. The queries' challenges range from stressing the textual character of the document to data analysis queries, but include also typical ad-hoc queries. We complement our research with results obtained from running the benchmark on our XML database platform. They are intended to give a first baseline, illustrating the state of the art

DKVF: A Framework for Rapid Prototyping and Evaluating Distributed Key-value Stores

We present our framework DKVF that enables one to quickly prototype and evaluate new protocols for key-value stores and compare them with existing protocols based on selected benchmarks. Due to limitations of CAP theorem, new protocols must be developed that achieve the desired trade-off between consistency and availability for the given application at hand. Hence, both academic and industrial communities focus on developing new protocols that identify a different (and hopefully better in one or more aspect) point on this trade-off curve. While these protocols are often based on a simple intuition, evaluating them to ensure that they indeed provide increased availability, consistency, or performance is a tedious task. Our framework, DKVF, enables one to quickly prototype a new protocol as well as identify how it performs compared to existing protocols for pre-specified benchmarks. Our framework relies on YCSB (Yahoo! Cloud Servicing Benchmark) for benchmarking. We demonstrate DKVF by implementing four existing protocols --eventual consistency, COPS, GentleRain and CausalSpartan-- with it. We compare the performance of these protocols against different loading conditions. We find that the performance is similar to our implementation of these protocols from scratch. And, the comparison of these protocols is consistent with what has been reported in the literature. Moreover, implementation of these protocols was much more natural as we only needed to translate the pseudocode into Java (and add the necessary error handling). Hence, it was possible to achieve this in just 1-2 days per protocol. Finally, our framework is extensible. It is possible to replace individual components in the framework (e.g., the storage component)