114,832 research outputs found
Referent tracking for corporate memories
For corporate memory and enterprise ontology systems to be maximally useful,
they must be freed from certain barriers placed around them by traditional
knowledge management paradigms. This means, above all, that they must mirror
more faithfully those portions of reality which are salient to the workings of the
enterprise, including the changes that occur with the passage of time. The purpose
of this chapter is to demonstrate how theories based on philosophical realism can
contribute to this objective. We discuss how realism-based ontologies (capturing
what is generic) combined with referent tracking (capturing what is specific) can
play a key role in building the robust and useful corporate memories of the future
An evolutionary approach to the representation of adverse events
One way to detect, monitor and prevent adverse events with the help of Information Technology is by using ontologies capable of representing three levels of reality: what is the case, what is believed about reality, and what is represented. We report on how Basic Formal Ontology and Referent Tracking exhibit this capability and how they are used to develop an adverse event ontology and related data annotation scheme for the European ReMINE project
Towards a style-specific basis for computational beat tracking
Outlined in this paper are a number of sources of evidence, from psychological, ethnomusicological and engineering grounds, to suggest that current approaches to computational beat tracking are incomplete. It is contended that the degree to which cultural knowledge, that is, the specifics of style and associated learnt representational schema, underlie the human faculty of beat tracking has been severely underestimated. Difficulties in building general beat tracking solutions, which can provide both period and phase locking across a large corpus of styles, are highlighted. It is probable that no universal beat tracking model exists which does not utilise a switching model to recognise style and context prior to application
Negative findings in electronic health records and biomedical ontologies: a realist approach
PURPOSEâA substantial fraction of the observations made by clinicians and entered into patient records are expressed by means of negation or by using terms which contain negative qualifiers (as in âabsence of pulseâ or âsurgical procedure not performedâ). This seems at first sight to present problems for ontologies, terminologies and data repositories that adhere to a realist view and thus reject any reference to putative non-existing entities. Basic Formal Ontology (BFO) and Referent
Tracking (RT) are examples of such paradigms. The purpose of the research here described was to test a proposal to capture negative findings in electronic health record systems based on BFO and RT.
METHODSâWe analysed a series of negative findings encountered in 748 sentences taken from 41 patient charts. We classified the phenomena described in terms of the various top-level categories and relations defined in BFO, taking into account the role of negation in the corresponding descriptions. We also studied terms from SNOMED-CT containing one or other form of negation. We then explored ways to represent the described phenomena by means of the types of representational units available to realist ontologies such as BFO.
RESULTSâWe introduced a new family of âlacksâ relations into the OBO Relation Ontology. The relation lacks_part, for example, defined in terms of the positive relation part_of, holds between a particular p and a universal U when p has no instance of U as part. Since p and U both exist, assertions involving âlacks_partâ and its cognates meet the requirements of positivity.
CONCLUSIONâBy expanding the OBO Relation Ontology, we were able to accommodate nearly all occurrences of negative findings in the sample studied
Ontology as the core discipline of biomedical informatics: Legacies of the past and recommendations for the future direction of research
The automatic integration of rapidly expanding information resources in the life sciences is one of the most challenging goals facing biomedical research today. Controlled vocabularies, terminologies, and coding systems play an important role in realizing this goal, by making it possible to draw together information from heterogeneous sources â for example pertaining to genes and proteins, drugs and diseases â secure in the knowledge that the same terms will also represent the same entities on all occasions of use. In the naming of genes, proteins, and other molecular structures, considerable efforts are under way to reduce the effects of the different naming conventions which have been spawned by different groups of researchers. Electronic patient records, too, increasingly involve the use of standardized terminologies, and tremendous efforts are currently being devoted to the creation of terminology resources that can meet the needs of a future era of personalized medicine, in which genomic and clinical data can be aligned in such a way that the corresponding information systems become interoperable
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