Combining Topological Maps, Multi-Label Simple Points, and Minimum-Length Polygons for Efficient Digital Partition Model

International audienceDeformable models have shown great potential for image segmentation. They include discrete models whose combinatorial formulation leads to efficient and sometimes optimal minimization algorithms. In this paper, we propose a new discrete framework to deform any partition while preserving its topology. We show how to combine the use of multi-label simple points, topological maps and minimum-length polygons in order to implement an efficient digital deformable partition model. Our experimental results illustrate the potential of our framework for segmenting images, since it allows the mixing of region-based, contour-based and regularization energies, while keeping the overall image structure

Semantic Object Parsing with Graph LSTM

By taking the semantic object parsing task as an exemplar application scenario, we propose the Graph Long Short-Term Memory (Graph LSTM) network, which is the generalization of LSTM from sequential data or multi-dimensional data to general graph-structured data. Particularly, instead of evenly and fixedly dividing an image to pixels or patches in existing multi-dimensional LSTM structures (e.g., Row, Grid and Diagonal LSTMs), we take each arbitrary-shaped superpixel as a semantically consistent node, and adaptively construct an undirected graph for each image, where the spatial relations of the superpixels are naturally used as edges. Constructed on such an adaptive graph topology, the Graph LSTM is more naturally aligned with the visual patterns in the image (e.g., object boundaries or appearance similarities) and provides a more economical information propagation route. Furthermore, for each optimization step over Graph LSTM, we propose to use a confidence-driven scheme to update the hidden and memory states of nodes progressively till all nodes are updated. In addition, for each node, the forgets gates are adaptively learned to capture different degrees of semantic correlation with neighboring nodes. Comprehensive evaluations on four diverse semantic object parsing datasets well demonstrate the significant superiority of our Graph LSTM over other state-of-the-art solutions.Comment: 18 page

Computerized Analysis of Magnetic Resonance Images to Study Cerebral Anatomy in Developing Neonates

The study of cerebral anatomy in developing neonates is of great importance for the understanding of brain development during the early period of life. This dissertation therefore focuses on three challenges in the modelling of cerebral anatomy in neonates during brain development. The methods that have been developed all use Magnetic Resonance Images (MRI) as source data. To facilitate study of vascular development in the neonatal period, a set of image analysis algorithms are developed to automatically extract and model cerebral vessel trees. The whole process consists of cerebral vessel tracking from automatically placed seed points, vessel tree generation, and vasculature registration and matching. These algorithms have been tested on clinical Time-of- Flight (TOF) MR angiographic datasets. To facilitate study of the neonatal cortex a complete cerebral cortex segmentation and reconstruction pipeline has been developed. Segmentation of the neonatal cortex is not effectively done by existing algorithms designed for the adult brain because the contrast between grey and white matter is reversed. This causes pixels containing tissue mixtures to be incorrectly labelled by conventional methods. The neonatal cortical segmentation method that has been developed is based on a novel expectation-maximization (EM) method with explicit correction for mislabelled partial volume voxels. Based on the resulting cortical segmentation, an implicit surface evolution technique is adopted for the reconstruction of the cortex in neonates. The performance of the method is investigated by performing a detailed landmark study. To facilitate study of cortical development, a cortical surface registration algorithm for aligning the cortical surface is developed. The method first inflates extracted cortical surfaces and then performs a non-rigid surface registration using free-form deformations (FFDs) to remove residual alignment. Validation experiments using data labelled by an expert observer demonstrate that the method can capture local changes and follow the growth of specific sulcus

CNN for Very Fast Ground Segmentation in Velodyne LiDAR Data

This paper presents a novel method for ground segmentation in Velodyne point clouds. We propose an encoding of sparse 3D data from the Velodyne sensor suitable for training a convolutional neural network (CNN). This general purpose approach is used for segmentation of the sparse point cloud into ground and non-ground points. The LiDAR data are represented as a multi-channel 2D signal where the horizontal axis corresponds to the rotation angle and the vertical axis the indexes channels (i.e. laser beams). Multiple topologies of relatively shallow CNNs (i.e. 3-5 convolutional layers) are trained and evaluated using a manually annotated dataset we prepared. The results show significant improvement of performance over the state-of-the-art method by Zhang et al. in terms of speed and also minor improvements in terms of accuracy.Comment: ICRA 2018 submissio

Semantically Informed Multiview Surface Refinement

We present a method to jointly refine the geometry and semantic segmentation of 3D surface meshes. Our method alternates between updating the shape and the semantic labels. In the geometry refinement step, the mesh is deformed with variational energy minimization, such that it simultaneously maximizes photo-consistency and the compatibility of the semantic segmentations across a set of calibrated images. Label-specific shape priors account for interactions between the geometry and the semantic labels in 3D. In the semantic segmentation step, the labels on the mesh are updated with MRF inference, such that they are compatible with the semantic segmentations in the input images. Also, this step includes prior assumptions about the surface shape of different semantic classes. The priors induce a tight coupling, where semantic information influences the shape update and vice versa. Specifically, we introduce priors that favor (i) adaptive smoothing, depending on the class label; (ii) straightness of class boundaries; and (iii) semantic labels that are consistent with the surface orientation. The novel mesh-based reconstruction is evaluated in a series of experiments with real and synthetic data. We compare both to state-of-the-art, voxel-based semantic 3D reconstruction, and to purely geometric mesh refinement, and demonstrate that the proposed scheme yields improved 3D geometry as well as an improved semantic segmentation