3D visualisation of the laetoli footprints on the internet

Bibliography: p. 84-86

Interactive visual exploration of a large spatio-temporal dataset: Reflections on a geovisualization mashup

Exploratory visual analysis is useful for the preliminary investigation of large structured, multifaceted spatio-temporal datasets. This process requires the selection and aggregation of records by time, space and attribute, the ability to transform data and the flexibility to apply appropriate visual encodings and interactions. We propose an approach inspired by geographical 'mashups' in which freely-available functionality and data are loosely but flexibly combined using de facto exchange standards. Our case study combines MySQL, PHP and the LandSerf GIS to allow Google Earth to be used for visual synthesis and interaction with encodings described in KML. This approach is applied to the exploration of a log of 1.42 million requests made of a mobile directory service. Novel combinations of interaction and visual encoding are developed including spatial 'tag clouds', 'tag maps', 'data dials' and multi-scale density surfaces. Four aspects of the approach are informally evaluated: the visual encodings employed, their success in the visual exploration of the clataset, the specific tools used and the 'rnashup' approach. Preliminary findings will be beneficial to others considering using mashups for visualization. The specific techniques developed may be more widely applied to offer insights into the structure of multifarious spatio-temporal data of the type explored here

Virtual software in reality

Software visualisation is an important weapon in the program comprehension armoury. It is a technique that can, when designed and used effectively, aid in understanding existing program code. It can achieve this by displaying information in new and different forms, which may make obvious something missed in reading the code. It can also be used to present many aspects of the data at once. Software, despite many software engineering advances in requirements, design and implementation techniques, continues to be complex and large and if anything seems to be growing in these respects. This means that techniques that failed to aid comprehension and maintenance are certainly not going to be able to deal with the current software. Therefore this area requires research to be able to suggest solutions to deal with the information overload that is sure to occur. There are several issues that this thesis addresses; all of them related to the creation of software visualisation systems that are capable of being used and useful well into the next generation of software systems. The scale and complexity of software are pressing issues, as is the associated information overload problem that this brings. In an attempt to address this problem the following are considered to be important: abstractions, representations, mappings, metaphors, and visualisations. These areas are interrelated and the first four enable the final one, visualisations. These problems are not the only ones that face software visualisation systems. There are many that are based on the general theory of the applicability of the technique to such tasks as program comprehension, rather than the detail of how a particular code fragment is shown. These problems are also related to the enabling technology of three- dimensional visualisations; virtual reality. In summary the areas of interest are: automation, evolution, scalability, navigation and interaction, correlation, and visual complexity. This thesis provides an exploration of these identified areas in the context of software visualisation. Relationships that describe, and distinguish between, existing and future software visualisations are presented, with examples based on recent software visualisation research. Two real world metaphors (and their associated mappings and representations) are defined for the purpose of visualising software as an aid to program comprehension. These metaphors also provide a vehicle for the exploration of the areas identified above. Finally, an evaluation of the visualisations is presented using a framework developed for the comparative evaluation of three-dimensional, comprehension oriented, software visualisations. This thesis has shown the viability of using three-dimensional software visualisations. The important issues of automation, evolution, scalability, and navigation have been presented and discussed, and their relationship to real world metaphors examined. This has been done in conjunction with an investigation into the use of such real world metaphors for software visualisation. The thesis as a whole has provided an important examination of many of the issues related to these types of visualisation in the context of software and is therefore a valuable basis for future work in this area

Introductory programming: a systematic literature review

As computing becomes a mainstream discipline embedded in the school curriculum and acts as an enabler for an increasing range of academic disciplines in higher education, the literature on introductory programming is growing. Although there have been several reviews that focus on specific aspects of introductory programming, there has been no broad overview of the literature exploring recent trends across the breadth of introductory programming. This paper is the report of an ITiCSE working group that conducted a systematic review in order to gain an overview of the introductory programming literature. Partitioning the literature into papers addressing the student, teaching, the curriculum, and assessment, we explore trends, highlight advances in knowledge over the past 15 years, and indicate possible directions for future research

Engineering simulations for cancer systems biology

Computer simulation can be used to inform in vivo and in vitro experimentation, enabling rapid, low-cost hypothesis generation and directing experimental design in order to test those hypotheses. In this way, in silico models become a scientific instrument for investigation, and so should be developed to high standards, be carefully calibrated and their findings presented in such that they may be reproduced. Here, we outline a framework that supports developing simulations as scientific instruments, and we select cancer systems biology as an exemplar domain, with a particular focus on cellular signalling models. We consider the challenges of lack of data, incomplete knowledge and modelling in the context of a rapidly changing knowledge base. Our framework comprises a process to clearly separate scientific and engineering concerns in model and simulation development, and an argumentation approach to documenting models for rigorous way of recording assumptions and knowledge gaps. We propose interactive, dynamic visualisation tools to enable the biological community to interact with cellular signalling models directly for experimental design. There is a mismatch in scale between these cellular models and tissue structures that are affected by tumours, and bridging this gap requires substantial computational resource. We present concurrent programming as a technology to link scales without losing important details through model simplification. We discuss the value of combining this technology, interactive visualisation, argumentation and model separation to support development of multi-scale models that represent biologically plausible cells arranged in biologically plausible structures that model cell behaviour, interactions and response to therapeutic interventions

Visualisation of Origins, Destinations and Flows with OD Maps

We present a new technique for the visual exploration of origins (O) and destinations (D) arranged in geographic space. Previous attempts to map the flows between origins and destinations have suffered from problems of occlusion usually requiring some form of generalisation, such as aggregation or flow density estimation before they can be visualized. This can lead to loss of detail or the introduction of arbitrary artefacts in the visual representation. Here, we propose mapping OD vectors as cells rather than lines, comparable with the process of constructing OD matrices, but unlike the OD matrix, we preserve the spatial layout of all origin and destination locations by constructing a gridded two‐level spatial treemap. The result is a set of spatially ordered small multiples upon which any arbitrary geographic data may be projected. Using a hash grid spatial data structure, we explore the characteristics of the technique through a software prototype that allows interactive query and visualisation of 105‐106 simulated and recorded OD vectors. The technique is illustrated using US county to county migration and commuting statistics

A Technical Solution to Allow Off-line Mobile Map Querying of Discrete and Continuous Geographic Attribute Data

In this article, a technique towards the generation of hybrid raster-attributes map for use in mobile devices is described. Our solution is based on coding the map attributes within an image using RGB values. The designed coding method enables the simultaneous storage of discrete thematic attributes and continuous quantitative attributes. This approach offers a wide range of possible uses. Small memory storage requirements and the simplicity of the software enable this coding method to be used efficiently in mobile devices without Internet connection. This article describes the basic fundamentals of the coding technique, as well as the operation and limitations regarding the volume of information. Two specific applications are presented: a topographic map used for recreational activities, and a visitor map of a university campus.Palomar-Vázquez, J.; Pardo Pascual, JE.; Sebastiá Tarín, L.; Recio Recio, JA. (2012). A Technical Solution to Allow Off-line Mobile Map Querying of Discrete and Continuous Geographic Attribute Data. Cartographic Journal. 49(2):143-152. doi:10.1179/1743277411Y.0000000029S14315249

Runtime visualisation of object-oriented software

Software is a complex and invisible entity, yet one which is core to modem life. The development and maintenance of such software includes one staple task, the need to understand the software at the implementation level. This process of program comprehension is difficult and time consuming. Yet, despite its importance, there remains very limited tool support for program comprehension activities. The results of this research show the role that runtime visualisation can play in aiding the comprehension of object-oriented software by highlighting both its static and dynamic structure. Previous work in this area is discussed, both in terms of the representations used and the methods of extracting runtime information. Building on this previous work, this thesis develops new representations of object-oriented software at runtime, which are then implemented in a proof of concept tool. This tool allowed the representations to be investigated on real software systems. The representations are evaluated against two feature-based evaluation frameworks. The evaluation focuses on generic software visualisation criteria, due to the lack of any specific frameworks for visualising dynamic information. The evaluation also includes lessons learnt in the implementation of a prototype visualisation tool. The object-oriented paradigm continues to grow in popularity and provides advantages to program comprehension activities. However, it also brings a number of new challenges to program comprehension due to the discrepancies between its static definition and its runtime structure. Therefore, techniques that highlight both the static definition and the runtime behaviour of object-oriented systems offer benefits to their comprehension. Software visualisation offers an approach to aid program comprehension activities through providing a means to deal with the size and complexity of the software and its invisible nature. This thesis highlights the generic issues that software visualisation faces, before focusing on how the visualisation of runtime information affects these issues. Many of the issues are compounded by the dynamic nature of the information to be visualised and the explosive growth in the volume of information that this dynamism can bring. Wider results of this research have allowed the proposal of the necessary concepts that should be considered in the design and evaluation of runtime visualisations. Software visualisation at runtime is still a relatively unexplored area and there remains many research challenges within it. This thesis aims to act as a first step to addressing these challenges and aims to promote interest and future development within this area