Machine Learning in Automated Text Categorization

The automated categorization (or classification) of texts into predefined categories has witnessed a booming interest in the last ten years, due to the increased availability of documents in digital form and the ensuing need to organize them. In the research community the dominant approach to this problem is based on machine learning techniques: a general inductive process automatically builds a classifier by learning, from a set of preclassified documents, the characteristics of the categories. The advantages of this approach over the knowledge engineering approach (consisting in the manual definition of a classifier by domain experts) are a very good effectiveness, considerable savings in terms of expert manpower, and straightforward portability to different domains. This survey discusses the main approaches to text categorization that fall within the machine learning paradigm. We will discuss in detail issues pertaining to three different problems, namely document representation, classifier construction, and classifier evaluation.Comment: Accepted for publication on ACM Computing Survey

FSMJ: Feature Selection with Maximum Jensen-Shannon Divergence for Text Categorization

In this paper, we present a new wrapper feature selection approach based on Jensen-Shannon (JS) divergence, termed feature selection with maximum JS-divergence (FSMJ), for text categorization. Unlike most existing feature selection approaches, the proposed FSMJ approach is based on real-valued features which provide more information for discrimination than binary-valued features used in conventional approaches. We show that the FSMJ is a greedy approach and the JS-divergence monotonically increases when more features are selected. We conduct several experiments on real-life data sets, compared with the state-of-the-art feature selection approaches for text categorization. The superior performance of the proposed FSMJ approach demonstrates its effectiveness and further indicates its wide potential applications on data mining.Comment: 8 pages, 6 figures, World Congress on Intelligent Control and Automation, 201

Toward Optimal Feature Selection in Naive Bayes for Text Categorization

Automated feature selection is important for text categorization to reduce the feature size and to speed up the learning process of classifiers. In this paper, we present a novel and efficient feature selection framework based on the Information Theory, which aims to rank the features with their discriminative capacity for classification. We first revisit two information measures: Kullback-Leibler divergence and Jeffreys divergence for binary hypothesis testing, and analyze their asymptotic properties relating to type I and type II errors of a Bayesian classifier. We then introduce a new divergence measure, called Jeffreys-Multi-Hypothesis (JMH) divergence, to measure multi-distribution divergence for multi-class classification. Based on the JMH-divergence, we develop two efficient feature selection methods, termed maximum discrimination ($MD$) and $MD-\chi^2$ methods, for text categorization. The promising results of extensive experiments demonstrate the effectiveness of the proposed approaches.Comment: This paper has been submitted to the IEEE Trans. Knowledge and Data Engineering. 14 pages, 5 figure

Automatic categorization of diverse experimental information in the bioscience literature

Background: Curation of information from bioscience literature into biological knowledge databases is a crucial way of capturing experimental information in a computable form. During the biocuration process, a critical first step is to identify from all published literature the papers that contain results for a specific data type the curator is interested in annotating. This step normally requires curators to manually examine many papers to ascertain which few contain information of interest and thus, is usually time consuming. We developed an automatic method for identifying papers containing these curation data types among a large pool of published scientific papers based on the machine learning method Support Vector Machine (SVM). This classification system is completely automatic and can be readily applied to diverse experimental data types. It has been in use in production for automatic categorization of 10 different experimental datatypes in the biocuration process at WormBase for the past two years and it is in the process of being adopted in the biocuration process at FlyBase and the Saccharomyces Genome Database (SGD). We anticipate that this method can be readily adopted by various databases in the biocuration community and thereby greatly reducing time spent on an otherwise laborious and demanding task. We also developed a simple, readily automated procedure to utilize training papers of similar data types from different bodies of literature such as C. elegans and D. melanogaster to identify papers with any of these data types for a single database. This approach has great significance because for some data types, especially those of low occurrence, a single corpus often does not have enough training papers to achieve satisfactory performance. Results: We successfully tested the method on ten data types from WormBase, fifteen data types from FlyBase and three data types from Mouse Genomics Informatics (MGI). It is being used in the curation work flow at WormBase for automatic association of newly published papers with ten data types including RNAi, antibody, phenotype, gene regulation, mutant allele sequence, gene expression, gene product interaction, overexpression phenotype, gene interaction, and gene structure correction. Conclusions: Our methods are applicable to a variety of data types with training set containing several hundreds to a few thousand documents. It is completely automatic and, thus can be readily incorporated to different workflow at different literature-based databases. We believe that the work presented here can contribute greatly to the tremendous task of automating the important yet labor-intensive biocuration effort

A study on mutual information-based feature selection for text categorization

Feature selection plays an important role in text categorization. Automatic feature selection methods such as document frequency thresholding (DF), information gain (IG), mutual information (MI), and so on are commonly applied in text categorization. Many existing experiments show IG is one of the most effective methods, by contrast, MI has been demonstrated to have relatively poor performance. According to one existing MI method, the mutual information of a category c and a term t can be negative, which is in conflict with the definition of MI derived from information theory where it is always non-negative. We show that the form of MI used in TC is not derived correctly from information theory. There are two different MI based feature selection criteria which are referred to as MI in the TC literature. Actually, one of them should correctly be termed "pointwise mutual information" (PMI). In this paper, we clarify the terminological confusion surrounding the notion of "mutual information" in TC, and detail an MI method derived correctly from information theory. Experiments with the Reuters-21578 collection and OHSUMED collection show that the corrected MI method’s performance is similar to that of IG, and it is considerably better than PMI