Deep Learning for Community Detection: Progress, Challenges and Opportunities

As communities represent similar opinions, similar functions, similar purposes, etc., community detection is an important and extremely useful tool in both scientific inquiry and data analytics. However, the classic methods of community detection, such as spectral clustering and statistical inference, are falling by the wayside as deep learning techniques demonstrate an increasing capacity to handle high-dimensional graph data with impressive performance. Thus, a survey of current progress in community detection through deep learning is timely. Structured into three broad research streams in this domain - deep neural networks, deep graph embedding, and graph neural networks, this article summarizes the contributions of the various frameworks, models, and algorithms in each stream along with the current challenges that remain unsolved and the future research opportunities yet to be explored.Comment: Accepted Paper in the 29th International Joint Conference on Artificial Intelligence (IJCAI 20), Survey Trac

Multiplex Communities and the Emergence of International Conflict

Advances in community detection reveal new insights into multiplex and multilayer networks. Less work, however, investigates the relationship between these communities and outcomes in social systems. We leverage these advances to shed light on the relationship between the cooperative mesostructure of the international system and the onset of interstate conflict. We detect communities based upon weaker signals of affinity expressed in United Nations votes and speeches, as well as stronger signals observed across multiple layers of bilateral cooperation. Communities of diplomatic affinity display an expected negative relationship with conflict onset. Ties in communities based upon observed cooperation, however, display no effect under a standard model specification and a positive relationship with conflict under an alternative specification. These results align with some extant hypotheses but also point to a paucity in our understanding of the relationship between community structure and behavioral outcomes in networks.Comment: arXiv admin note: text overlap with arXiv:1802.0039

edge2vec: Representation learning using edge semantics for biomedical knowledge discovery

Representation learning provides new and powerful graph analytical approaches and tools for the highly valued data science challenge of mining knowledge graphs. Since previous graph analytical methods have mostly focused on homogeneous graphs, an important current challenge is extending this methodology for richly heterogeneous graphs and knowledge domains. The biomedical sciences are such a domain, reflecting the complexity of biology, with entities such as genes, proteins, drugs, diseases, and phenotypes, and relationships such as gene co-expression, biochemical regulation, and biomolecular inhibition or activation. Therefore, the semantics of edges and nodes are critical for representation learning and knowledge discovery in real world biomedical problems. In this paper, we propose the edge2vec model, which represents graphs considering edge semantics. An edge-type transition matrix is trained by an Expectation-Maximization approach, and a stochastic gradient descent model is employed to learn node embedding on a heterogeneous graph via the trained transition matrix. edge2vec is validated on three biomedical domain tasks: biomedical entity classification, compound-gene bioactivity prediction, and biomedical information retrieval. Results show that by considering edge-types into node embedding learning in heterogeneous graphs, \textbf{edge2vec}\ significantly outperforms state-of-the-art models on all three tasks. We propose this method for its added value relative to existing graph analytical methodology, and in the real world context of biomedical knowledge discovery applicability.Comment: 10 page