2,566 research outputs found
A Machine Learning Based Analytical Framework for Semantic Annotation Requirements
The Semantic Web is an extension of the current web in which information is
given well-defined meaning. The perspective of Semantic Web is to promote the
quality and intelligence of the current web by changing its contents into
machine understandable form. Therefore, semantic level information is one of
the cornerstones of the Semantic Web. The process of adding semantic metadata
to web resources is called Semantic Annotation. There are many obstacles
against the Semantic Annotation, such as multilinguality, scalability, and
issues which are related to diversity and inconsistency in content of different
web pages. Due to the wide range of domains and the dynamic environments that
the Semantic Annotation systems must be performed on, the problem of automating
annotation process is one of the significant challenges in this domain. To
overcome this problem, different machine learning approaches such as supervised
learning, unsupervised learning and more recent ones like, semi-supervised
learning and active learning have been utilized. In this paper we present an
inclusive layered classification of Semantic Annotation challenges and discuss
the most important issues in this field. Also, we review and analyze machine
learning applications for solving semantic annotation problems. For this goal,
the article tries to closely study and categorize related researches for better
understanding and to reach a framework that can map machine learning techniques
into the Semantic Annotation challenges and requirements
Using Neural Networks for Relation Extraction from Biomedical Literature
Using different sources of information to support automated extracting of
relations between biomedical concepts contributes to the development of our
understanding of biological systems. The primary comprehensive source of these
relations is biomedical literature. Several relation extraction approaches have
been proposed to identify relations between concepts in biomedical literature,
namely, using neural networks algorithms. The use of multichannel architectures
composed of multiple data representations, as in deep neural networks, is
leading to state-of-the-art results. The right combination of data
representations can eventually lead us to even higher evaluation scores in
relation extraction tasks. Thus, biomedical ontologies play a fundamental role
by providing semantic and ancestry information about an entity. The
incorporation of biomedical ontologies has already been proved to enhance
previous state-of-the-art results.Comment: Artificial Neural Networks book (Springer) - Chapter 1
NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding.
Machine reading (MR) is essential for unlocking valuable knowledge contained in millions of existing biomedical documents. Over the last two decades1,2, the most dramatic advances in MR have followed in the wake of critical corpus development3. Large, well-annotated corpora have been associated with punctuated advances in MR methodology and automated knowledge extraction systems in the same way that ImageNet4 was fundamental for developing machine vision techniques. This study contributes six components to an advanced, named entity analysis tool for biomedicine: (a) a new, Named Entity Recognition Ontology (NERO) developed specifically for describing textual entities in biomedical texts, which accounts for diverse levels of ambiguity, bridging the scientific sublanguages of molecular biology, genetics, biochemistry, and medicine; (b) detailed guidelines for human experts annotating hundreds of named entity classes; (c) pictographs for all named entities, to simplify the burden of annotation for curators; (d) an original, annotated corpus comprising 35,865 sentences, which encapsulate 190,679 named entities and 43,438 events connecting two or more entities; (e) validated, off-the-shelf, named entity recognition (NER) automated extraction, and; (f) embedding models that demonstrate the promise of biomedical associations embedded within this corpus
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